Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_D12
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   155   6e-38
04_03_0189 + 12444797-12444976,12445057-12445204,12445574-124458...    30   2.2  
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    29   5.0  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  155 bits (375), Expect = 6e-38
 Identities = 69/110 (62%), Positives = 89/110 (80%)
 Frame = +2

Query: 89  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 268
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 269 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 418
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>04_03_0189 +
           12444797-12444976,12445057-12445204,12445574-12445874,
           12445930-12446144,12446145-12446282,12446414-12446605,
           12446740-12446786
          Length = 406

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 11  SXYRCHYRESLKILLFFVHRDLE-VRNMTRKRRNGGRAKHG 130
           S  RC++ E   + +FF     +  RN+++  + GG+A HG
Sbjct: 75  SEKRCNFLEHYDLRVFFGREHFQSCRNVSKDEKRGGKATHG 115


>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 244 ISDRRRFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLQIPV 65
           +S+ R      NH   D     H P A+C  H  ++  + LG+  +T      ++LQ PV
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQSPV 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,997
Number of Sequences: 37544
Number of extensions: 407718
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)