Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C17
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.2  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   FPXPIKTIVESLKI*HSSVLQSGSHLLRTQSL 101
           FP  + T V S+ I  S+V+Q+G+++   Q L
Sbjct: 729 FPTNVATTVTSMSIDQSTVIQTGANVNLWQPL 760


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 52  TPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 147
           T L CS  R    LS+S +  GR +  S R+H
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVH 659


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 172 HHRSLGQSDAGEENYELGGHDVL 104
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 396 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQES-QKLAKKVSS 554
           +EQ  QN++   +     H  ++KNA    +K    +  ++Q+S +KL  K  S
Sbjct: 48  MEQDDQNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKS 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,229
Number of Sequences: 438
Number of extensions: 2602
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)