Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C16
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.034
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 18/63 (28%), Positives = 20/63 (31%)
 Frame = +1

Query: 754 PTPXGXPXXPVPPFPPPXXPXXPIXXXXPP*RDLXXPVXXRXXXQXGAGXPQTPXXPPPP 933
           PTP   P    P  PP   P  P+     P      P+         A  P  P  P PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 934 XXP 942
             P
Sbjct: 478 PAP 480



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +3

Query: 798 PPXXTPXANXXXXPPVKGPXXARXXPXRTPXXGRXXPNXPGPPPXXXP 941
           PP     +N    PP   P          P  GR  P  P PPP   P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRSAP 370


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 754  PTPXGXPXXPVPPFPPPXXPXXP 822
            P P G P  P PP P    P  P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = -3

Query: 941 GXXGGGGXXGVWGXPAPXWXXXRXXTGXXRSLYGGXXXXIGXXGXXGGGKGGTGXXGXPX 762
           G  GG G       P P         G     +GG     G  G   GG GG G  G P 
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG--GGPG 245

Query: 761 GVG 753
           G G
Sbjct: 246 GFG 248


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/60 (25%), Positives = 19/60 (31%)
 Frame = +1

Query: 754  PTPXGXPXXPVPPFPPPXXPXXPIXXXXPP*RDLXXPVXXRXXXQXGAGXPQTPXXPPPP 933
            P P      P  P P    P  P+    PP   +  P       +  +G P  P   P P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPP---VPIPTSTPPVPKSSSGAPSAPPPVPAP 1069


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
 Frame = +1

Query: 754 PTPXGXPXXPVP-PFPPPXXPXXPIXXXXPP*RDLXXPVXXRXXXQXGAGXPQTPXXPPP 930
           P P      P P P P P  P  PI    PP                GAG P  P  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP--------PPPPPGVAGAGPP--PPPPPP 782

Query: 931 PXXPLXG 951
           P     G
Sbjct: 783 PAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,492
Number of Sequences: 5004
Number of extensions: 13300
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)