Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C13
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   177   6e-45
Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    30   1.9  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    30   1.9  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score =  177 bits (432), Expect = 6e-45
 Identities = 85/179 (47%), Positives = 119/179 (66%)
 Frame = +2

Query: 266 QASKLLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQ 445
           +A +      ++D+ LLD +V  +    G +Q  A  IL +LKE  D+WT+VD IL+YSQ
Sbjct: 11  EAKRQFAQGDRIDVTLLDQVVEIMNRMSGKEQAEANQILMSLKEERDSWTKVDAILQYSQ 70

Query: 446 NQETKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLN 625
             E+KY+ALQILE VI  +WK LP+ Q EGIK YI+  + + SSD   ME +++ L KLN
Sbjct: 71  LNESKYFALQILETVIQHKWKSLPQVQREGIKSYIITKMFELSSDQSVMEQSQLLLHKLN 130

Query: 626 MILIQVLKREWPHNWXTFISDIVGASKTNESLCQNNMEIFKLLSXXVFMFSTGXLTXXK 802
           ++L+Q++K++WP  W TFI+DIV +SK NE++C NNM I  LLS  VF F +  LT  K
Sbjct: 131 LVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNMNILSLLSEEVFDFGSQNLTQAK 189


>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +2

Query: 455 TKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVT---MESNKVYLKKLN 625
           T+Y   Q++++++ T  K+ P +      K + GLI+   S+ VT   + + K   K L 
Sbjct: 94  TQYNCKQVVKEIVQTFDKLNPEDL-----KILHGLILAKDSESVTPLHIAATKQDTKILK 148

Query: 626 MILIQVLKREWPHNWXTFISDIVGASKTNESLCQNNMEIFKLL 754
            I +++LK        + + D    S  + + C+ N+E  ++L
Sbjct: 149 -IFVEILKTPKVMELFSIVKDKRDRSPLHYAACKVNLEALRIL 190


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +2

Query: 455 TKYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVT---MESNKVYLKKLN 625
           T+Y   Q++++++ T  K+ P +      K + GLI+   S+ VT   + + K   K L 
Sbjct: 94  TQYNCKQVVKEIVQTFDKLNPEDL-----KILHGLILAKDSESVTPLHIAATKQDTKILK 148

Query: 626 MILIQVLKREWPHNWXTFISDIVGASKTNESLCQNNMEIFKLL 754
            I +++LK        + + D    S  + + C+ N+E  ++L
Sbjct: 149 -IFVEILKTPKVMELFSIVKDKRDRSPLHYAACKVNLEALRIL 190


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -3

Query: 288 KSKSLDACCSKVAIL-VKYIYLVNLFPF-FQNQNYFD*STFIP---HLIQHRENNLRRNQ 124
           ++ SL    +K A+L  K   L  LFP  FQ Q      TFIP   H   H+E   R  Q
Sbjct: 114 RAMSLKYMDTKKALLRTKLFSLHYLFPLLFQTQ------TFIPRQNHAQVHKETMQRHPQ 167

Query: 123 SNALPYILIRCFHEA*KS 70
            N  PY+    F EA K+
Sbjct: 168 DNYAPYLDFGGFSEAQKA 185


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 232  NIFYQNGNLRTTGI*TFGFQSKIGHQFIGQ 321
            +I YQ GN  T G+   GF    G+QF G+
Sbjct: 1382 HIPYQGGNFNTRGVSRGGFSYTSGNQFRGR 1411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,442,029
Number of Sequences: 27780
Number of extensions: 353278
Number of successful extensions: 882
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)