Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C11
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092654-1|BAC03938.1|  354|Homo sapiens UBUNIT (EC 2.4.1.-).  p...    33   1.0  
AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>AK092654-1|BAC03938.1|  354|Homo sapiens UBUNIT (EC 2.4.1.-).
           protein.
          Length = 354

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 616 PGVSPWXAPSVRSPVSDPAAYRIPVRLSPXSGSVALSHSSRCRYLSSGVGRSLQ-AGLCA 792
           PG + W   S RS VS PAA     R SP S +   S        +S   RSL       
Sbjct: 201 PGFTAWKTSSARSAVSTPAAACECSRSSPTSWTTRSSRLGAAGPSASPAPRSLPFPAPGL 260

Query: 793 RTPRFSPTAAP 825
           R+ RFS +A P
Sbjct: 261 RSQRFSTSAPP 271


>AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35392 fis, clone SKNSH2000716. ).
          Length = 149

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/39 (51%), Positives = 20/39 (51%)
 Frame = -1

Query: 554 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYHPDSV 438
           RQ  G  G   A R F  S P  GLL  CS LR  PDSV
Sbjct: 69  RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,293,474
Number of Sequences: 237096
Number of extensions: 2602177
Number of successful extensions: 7595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7595
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)