Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C10
         (1048 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.9  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   3.3  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   7.7  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 585 PHDWADYEPDNAGDNENCILMNPDGNFADVN 677
           PH W DYE ++    +NC L + +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 714 KTSTVAMASCGSVDSEYVLSKDTGNCYKFHKVPRYLVA 827
           KTS V      ++    ++ KD+ + YK++K P  L A
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSA 390


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 501 KSCSLLEITCRSS--THRPEEMPKRTLQDDISIV 406
           +SC    + C  S   H  E  P  T+QDD+S++
Sbjct: 403 QSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVI 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,653
Number of Sequences: 5004
Number of extensions: 62018
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)