Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C10
         (1048 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    28   0.12 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 840 GHVGTRPGXEELCGTCNNYQCLC*EHIHCQRCHK 739
           G V    G +ELCG   NY  +C E + C  C+K
Sbjct: 57  GIVQCAKGPDELCGGPQNYLGICAEGMQCS-CNK 89


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 501 KSCSLLEITCRSSTHRPEEMPKR 433
           + CS+  IT  +ST  P+  P+R
Sbjct: 401 QKCSIESITSVNSTSSPKPFPRR 423


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 856 RLLLNRPCRHAT 821
           +LLL+ PC+H T
Sbjct: 63  KLLLSNPCKHPT 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,414
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)