Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C06
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       36   0.057
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.6  
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    28   8.6  
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077     28   8.6  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
 Frame = +1

Query: 157 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 321
           SN D GF      G PG  P+  G    P                Y P    P    PP 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70

Query: 322 DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 426
            Y P+  GY P   GAY       +P + P  +PG
Sbjct: 71  GYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 277 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 435
           Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 108 HEEFHFYMITSYHRRKY*SCQNLKEFPIV 22
           HEE+  + +  +HR+     +  KEFPIV
Sbjct: 364 HEEYEVFELRIFHRKNRTGFEENKEFPIV 392


>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
          Length = 247

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = -1

Query: 474 YFVINFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRA 295
           YF I F+ + + PT  +  + + +    L    V+C+ ++  V   +R +++G   DV+A
Sbjct: 80  YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136

Query: 294 VVNRFVAVSWPLGSVVGTVYVRWSSTYWHVSGLTDYGPRKARI-RVRDENLSVGHSQQSE 118
            V         L    G +Y R +     +S L  YG     I  V  E LS+  +  ++
Sbjct: 137 QVT--------LNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTAAATD 188

Query: 117 DENHEE 100
            EN+ +
Sbjct: 189 AENNRQ 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,485
Number of Sequences: 37544
Number of extensions: 390172
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)