Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C05
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    38   0.007
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        28   9.7  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    28   9.7  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   9.7  

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 153 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 323
           P RK   +G+  +  C    EP C  ENPE  D V     C    C C +  VR++ TGK
Sbjct: 71  PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124

Query: 324 CVPESEC 344
           CV +++C
Sbjct: 125 CVEKNKC 131


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 195 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 344
           C QM  P CE+P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = +3

Query: 99  LYLLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVP 275
           L   FV+A+V  +  +       C  GE     C  M  P+    ++   +    P   P
Sbjct: 7   LVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPP 63

Query: 276 QCFCDRPNVRNTKTGKCVPESEC**NCV 359
           +C C   NVRN  TG  +P      NCV
Sbjct: 64  KCVCTEGNVRNIITGPSLPALFKPYNCV 91


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  LYLLFVVAAVGYVTGQHFPTRKCPKG 176
           L L F VA VGY+   +   RK PKG
Sbjct: 5   LILAFFVATVGYLVHFYLKVRKYPKG 30


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  LYLLFVVAAVGYVTGQHFPTRKCPKG 176
           L L F VA VGY+   +   RK PKG
Sbjct: 5   LILAFFVATVGYLVHFYLKVRKYPKG 30


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 180 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC 344
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGC 213


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 180 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC 344
           H V  C    +  DC NP       + G C  P QC C       T+  +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGC 213


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +3

Query: 141 GQHFPTRKCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTG 320
           GQ  P   C         C    EP C NP           C    C C    VRN  T 
Sbjct: 32  GQRLP---CRGRNEEYKTCGTACEPSCTNPNPMC----TKQCINNVCQCRSGYVRNEITR 84

Query: 321 KCVPESEC 344
           +CV +++C
Sbjct: 85  QCVRQAQC 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,897
Number of Sequences: 27780
Number of extensions: 226087
Number of successful extensions: 505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)