Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C04
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    27   2.7  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   8.3  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 364 LVSIRTDYCTIPDSIIIMNSDGLRV*FI-FMTNDMINV 474
           LVS++T++  + DS+  +  +G  V F+   TN +IN+
Sbjct: 191 LVSVQTEHKCVLDSLRALQEEGFEVTFLPVQTNGLINL 228


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/63 (25%), Positives = 23/63 (36%)
 Frame = -3

Query: 474 NINHVISHKNESNSQTVAVHYYYRIRYRAVVGAYTDEGPMSQYCKASMWLVWIFRTSSSQ 295
           N+N +    +ESN Q+          ++          P   Y     WLVW     +S 
Sbjct: 414 NMNFLYYIPDESNHQSYENKANRDSDFQGQTSLTQGSAPPWHYIPCQSWLVWYPSEDASN 473

Query: 294 PAS 286
           PAS
Sbjct: 474 PAS 476


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 573 VTSHQEPTHEATSSRIV*DSFRKLIRSVDLRYRNINHVISHKNESNSQTVAVHYYYRIR 397
           V S++E T E T S        K++R V L YR+ N  +  K E+    + +H Y + R
Sbjct: 829 VESNEETTREETPSS------DKVLRIVRL-YRDKNGNLERKQETIHDPIVIHAYLKKR 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,222
Number of Sequences: 5004
Number of extensions: 57782
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)