Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_C04
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 33 0.23
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 33 0.30
03_03_0278 - 16126803-16129049 32 0.70
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 29 6.6
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 29 6.6
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 6.6
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652... 28 8.7
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 28 8.7
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570 28 8.7
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 332 CGWSGYSAPAPRSQRPSCR 276
CG+ GYS PAP++ RPSCR
Sbjct: 63 CGY-GYSTPAPKAPRPSCR 80
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 205 DPGARVVPGAAREPRHRPAHSHTL 276
D G R VPG + PRHRP H T+
Sbjct: 81 DGGRRAVPGQSTVPRHRPRHDPTI 104
>03_03_0278 - 16126803-16129049
Length = 748
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 686 FXLSXLKLXMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNLH 549
F S K MN + + L + PTC +P + +P+PPT ++H
Sbjct: 207 FWTSCNKCKMNYEYLKVYLNHNLLCPTCREPFLAQEVPMPPTESVH 252
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 54 LPACLTCLARAAPRHGPPPLGSCTQRSLSAR 146
LPA L AR+A R PP G C R+ R
Sbjct: 93 LPAALRATARSANRSPGPPAGQCGGRNCRRR 123
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 380 VRILTRVRCPSIARPPCGWSGYSAPAPRSQR 288
V I PS+ P CG S Y PA SQ+
Sbjct: 161 VTITASATLPSLRPPSCGQSAYCVPATLSQK 191
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 360 PMSQYCKASMWLVWIFRTSSSQPASV-LQKGVTVCWTMTRLTGRAR 226
P+ +YC +W +WI ++ QP V Q+ + W+ GRA+
Sbjct: 816 PLVKYCPPELWRMWI--SNLLQPLFVHCQQALDFSWSSLLREGRAK 859
>07_03_0487 -
18663890-18663964,18664286-18664441,18664693-18665295,
18665566-18665894,18665992-18666504,18667128-18667242,
18667326-18667397,18667480-18667644,18668604-18668752,
18668830-18668899,18668975-18669121,18669199-18669267,
18669366-18669416,18669537-18669629,18670122-18670211
Length = 898
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 183 LTTSQSAAISVRSELRASAEYNCRVEAGHVEERRVPSTSS 64
++ SQ+A + L+A A N V HV + +PST+S
Sbjct: 645 ISNSQNAVSMGQQVLQALASQNTNVNRSHVTDSPLPSTTS 684
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 235 PRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESE 131
P+ VR V R +TVP+ +TD A G EK E E
Sbjct: 120 PKFVR-VLRPKTVPIRYTDTFASGTVALEKELEKE 153
>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
Length = 179
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 614 APTCSQPEPSYTLPLPPTRNLHMRRHRH 531
+P P P + PLPP R L R RH
Sbjct: 18 SPRHLHPSPRHLRPLPPIRLLRAARRRH 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,570,136
Number of Sequences: 37544
Number of extensions: 487835
Number of successful extensions: 1847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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