Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C04
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha pro...    29   3.4  
Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic helix-loo...    29   5.9  
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    29   5.9  

>Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical
           protein F25D7.2 protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 14/76 (18%), Positives = 37/76 (48%)
 Frame = -3

Query: 513 FRKLIRSVDLRYRNINHVISHKNESNSQTVAVHYYYRIRYRAVVGAYTDEGPMSQYCKAS 334
           +++   + D+R RN+N+  S++N ++   +  +    + ++    AY    P +Q  +  
Sbjct: 102 YQQTTPTADVRRRNVNNTASNQNSASGSALNEYAQNMVAWQQYWNAYNQLSPEAQVSEHQ 161

Query: 333 MWLVWIFRTSSSQPAS 286
             +   +  +S+ PA+
Sbjct: 162 RLMAHYYTYASTTPAA 177


>Z82287-4|CAB05314.1|  433|Caenorhabditis elegans Hypothetical
           protein ZK550.4 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 510 RKLIRSVDLRYRNINHVISHKNESNSQTVAVHYYYRIRYRAVV 382
           R+L+ S+          I+ KNE N++TV++ +YY I YRAV+
Sbjct: 73  RQLLASLKAEKLVKERTITQKNE-NNRTVSIIFYY-INYRAVL 113


>Y08816-1|CAA70050.2|  433|Caenorhabditis elegans TFIIE-alpha
           protein protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 510 RKLIRSVDLRYRNINHVISHKNESNSQTVAVHYYYRIRYRAVV 382
           R+L+ S+          I+ KNE N++TV++ +YY I YRAV+
Sbjct: 73  RQLLASLKAEKLVKERTITQKNE-NNRTVSIIFYY-INYRAVL 113


>Z68338-5|CAA92758.1|  203|Caenorhabditis elegans Hypothetical
           protein T24B8.6 protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 650 TPMDLELYP*-VCAPTCSQPEPSYTLP-LPPTRNLHMRRH 537
           TP    +YP  VC+     P PSYT P  PP + +   +H
Sbjct: 133 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQH 172


>U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic
           helix-loop-helix DNA bindingprotein HLH-3 protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 650 TPMDLELYP*-VCAPTCSQPEPSYTLP-LPPTRNLHMRRH 537
           TP    +YP  VC+     P PSYT P  PP + +   +H
Sbjct: 100 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQH 139


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 306 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 190
           +S++P+S  +  +TVC WT  R    A Y   + + P  C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,818
Number of Sequences: 27780
Number of extensions: 374062
Number of successful extensions: 1119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)