Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C03
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   176   3e-45
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   176   3e-45
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    38   0.002

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  176 bits (429), Expect = 3e-45
 Identities = 84/142 (59%), Positives = 99/142 (69%)
 Frame = -2

Query: 655 GKPRGIRTGXKHVNXXREXXWXDKEFKKAHMGTKWKANPFGGAXHAKGXVLEKVGVEXKQ 476
           GKP G+    K  N  RE  W D  +KK  +GT +K++PFGG+ HAKG V+EK+GVE KQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 475 PNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFK 296
           PN AIRK VRVQ IKNGKKVTA VP DGCLN  +EN EV ++GFG KG A G  PGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121

Query: 295 VVKVAXXXXLAXYKEXKXRPRS 230
           VVKVA     A + E K +PR+
Sbjct: 122 VVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  176 bits (429), Expect = 3e-45
 Identities = 84/142 (59%), Positives = 99/142 (69%)
 Frame = -2

Query: 655 GKPRGIRTGXKHVNXXREXXWXDKEFKKAHMGTKWKANPFGGAXHAKGXVLEKVGVEXKQ 476
           GKP G+    K  N  RE  W D  +KK  +GT +K++PFGG+ HAKG V+EK+GVE KQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 475 PNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFK 296
           PN AIRK VRVQ IKNGKKVTA VP DGCLN  +EN EV ++GFG KG A G  PGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121

Query: 295 VVKVAXXXXLAXYKEXKXRPRS 230
           VVKVA     A + E K +PR+
Sbjct: 122 VVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 27/82 (32%), Positives = 44/82 (53%)
 Frame = -2

Query: 532 GAXHAKGXVLEKVGVEXKQPNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXV 353
           G+   +G       V+ K+PN A+RK  RV+ +  G+ VTA +P  G  ++ +E+  V +
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVR-LSTGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 352 AGFGXKGHAVGXXPGVRFKVVK 287
            G    G A    PGV++ VV+
Sbjct: 104 RG----GRA-QDCPGVQYHVVR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,661
Number of Sequences: 5004
Number of extensions: 31680
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)