Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C03
         (941 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   205   2e-52
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               205   2e-52
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   205   2e-52
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...    87   9e-17

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  205 bits (500), Expect = 2e-52
 Identities = 100/142 (70%), Positives = 107/142 (75%)
 Frame = -2

Query: 655 GKPRGIRTGXKHVNXXREXXWXDKEFKKAHMGTKWKANPFGGAXHAKGXVLEKVGVEXKQ 476
           GK RG+RT  K  +  R+  W DK++KKAH+GT  KANPFGGA HAKG VLEKVGVE KQ
Sbjct: 2   GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 475 PNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFK 296
           PN AIRK VRVQ IKNGKK+TA VP DGCLN  EEN EV VAGFG KGHAVG  PGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 295 VVKVAXXXXLAXYKEXKXRPRS 230
           VVKVA    LA YK  K RPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  205 bits (500), Expect = 2e-52
 Identities = 100/142 (70%), Positives = 107/142 (75%)
 Frame = -2

Query: 655 GKPRGIRTGXKHVNXXREXXWXDKEFKKAHMGTKWKANPFGGAXHAKGXVLEKVGVEXKQ 476
           GK RG+RT  K  +  R+  W DK++KKAH+GT  KANPFGGA HAKG VLEKVGVE KQ
Sbjct: 2   GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 475 PNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFK 296
           PN AIRK VRVQ IKNGKK+TA VP DGCLN  EEN EV VAGFG KGHAVG  PGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 295 VVKVAXXXXLAXYKEXKXRPRS 230
           VVKVA    LA YK  K RPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  205 bits (500), Expect = 2e-52
 Identities = 100/142 (70%), Positives = 107/142 (75%)
 Frame = -2

Query: 655 GKPRGIRTGXKHVNXXREXXWXDKEFKKAHMGTKWKANPFGGAXHAKGXVLEKVGVEXKQ 476
           GK RG+RT  K  +  R+  W DK++KKAH+GT  KANPFGGA HAKG VLEKVGVE KQ
Sbjct: 2   GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 475 PNXAIRKXVRVQXIKNGKKVTAXVPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFK 296
           PN AIRK VRVQ IKNGKK+TA VP DGCLN  EEN EV VAGFG KGHAVG  PGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 295 VVKVAXXXXLAXYKEXKXRPRS 230
           VVKVA    LA YK  K RPRS
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score = 87.0 bits (206), Expect = 9e-17
 Identities = 42/58 (72%), Positives = 42/58 (72%)
 Frame = -2

Query: 406 VPRDGCLNHXEENXEVXVAGFGXKGHAVGXXPGVRFKVVKVAXXXXLAXYKEXKXRPR 233
           VP DGCLN  EEN EV VAGFG KGHAVG  PGVRFKVVKVA    LA YK  K RPR
Sbjct: 2   VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,637,237
Number of Sequences: 237096
Number of extensions: 1457498
Number of successful extensions: 908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)