Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C02
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    28   1.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   4.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   8.4  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   8.4  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   8.4  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 361 PSTTDFTFVKGNPSIAGRFEIVANEAQSAL 272
           PS +   FVK  PSI+ +F  +A E +S L
Sbjct: 443 PSCSSHAFVKAIPSISSKFSQLAEEYESQL 472


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 132 DCDWKHDRRGHQRSWQSRD 188
           D  WKHD+  +++ +Q RD
Sbjct: 64  DNSWKHDKYSYEKRYQERD 82


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 585 NXYSSLPSLTXFILPE 538
           N YS LPSL  F+LP+
Sbjct: 574 NEYSELPSLDRFVLPK 589


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 488 EQNNYDPEDPRCTRLMLSGKMXKVKEGSDEYXFAK 592
           E +NYD  + +    +   +  +  EGSD+Y +AK
Sbjct: 291 EISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAK 325


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 180 SRDSANEITSRRRSDPPDHTKLIAMARYVLHSADWASLATISNL 311
           SRDS  E   + +  PPD+T  ++ +      A   S  +I +L
Sbjct: 66  SRDSMKESYDKNKGTPPDYTSYVSHSDAEPEQASSKSSTSIEDL 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,336
Number of Sequences: 5004
Number of extensions: 63788
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)