Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_C02
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720... 56 3e-08
01_01_1129 - 8948612-8950117,8951354-8951503 32 0.71
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851... 30 2.2
08_02_1259 - 25676523-25676624,25676726-25676851,25677023-256771... 30 2.2
02_02_0286 - 8589736-8590857 30 2.2
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849 30 2.9
04_04_1597 - 34690787-34691302,34691627-34691731 29 3.8
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 29 6.7
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 28 8.8
>06_01_0933 -
7199375-7199402,7199497-7199614,7199705-7199783,
7200641-7200842,7200940-7200975,7201912-7202096
Length = 215
Score = 56.4 bits (130), Expect = 3e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +3
Query: 228 PDHTKLIAMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSP 407
P T+ A AR++ W L+TIS+ + G PF NV S DG S G+PYFY++
Sbjct: 40 PAPTEAAATARWLAAQNTWGVLSTISS--DLSGAPFGNVVSYSDGVPGESHGIPYFYLTT 97
Query: 408 LDFSARDLTKNSRAT 452
LD +ARD ++ R +
Sbjct: 98 LDPTARDALEDERTS 112
Score = 54.8 bits (126), Expect = 9e-08
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +2
Query: 503 DPEDPRCTRLMLSGKMXKVKEGSDEYXFAKAALFERHPAMANWPTDH 643
DPE+P C +L L+GK+ + S E AK ALF +HP M WP +H
Sbjct: 127 DPENPTCAKLTLTGKLKLIDPQSSEADLAKEALFTKHPEMEGWPKNH 173
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 661 KMKIALIXMVDWFGGAQYIPXRDYLAY 741
K++I I ++DWFGG + I +YL Y
Sbjct: 179 KLEIKNIFLIDWFGGPKPISPTEYLEY 205
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 31.9 bits (69), Expect = 0.71
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +2
Query: 452 CSRYL*XETKFCEQNNYDPEDPR-----CTRLMLS-GKMXKVKEGSDEYXFAKAALFERH 613
C R +TKFC NNY+ PR C R + G M V G+ ++L RH
Sbjct: 170 CPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSSSLHYRH 229
Query: 614 PAMA 625
MA
Sbjct: 230 LLMA 233
>09_04_0701 +
19583386-19583554,19584290-19584441,19585123-19585181,
19585319-19585344,19585407-19585758,19586184-19586667
Length = 413
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 150 DRRGHQRSWQSRDSANEITSRRRSDP-PDHTKLIAMARYVLHSADWASLATISNLPAIEG 326
+ RGH S I S S+P P T+ + L + + ++ + + A
Sbjct: 273 ETRGHGHGMTSHAVQQTIPSSMASNPQPPATRRVRPR--ALSITSFIAASSSAEIRAPHD 330
Query: 327 FPFTNVKSVVDGSLANSTGVP 389
FP T S +G++ N G P
Sbjct: 331 FPLTETASTTNGNIRNGVGAP 351
>08_02_1259 -
25676523-25676624,25676726-25676851,25677023-25677134,
25677294-25677385,25677751-25677828,25677910-25677989,
25678079-25678181,25678274-25678336,25678988-25679194
Length = 320
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 258 RYVLHSADWASLATISN--LPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSPLDFSARDL 431
R ++ A +A L T+ + G+PF S+VD S +S G P F +SPL R+L
Sbjct: 85 RNLMEQARFAHLCTVMSGMHHRRTGYPFG---SLVDFS-NDSMGHPIFSLSPLAIHTRNL 140
Query: 432 TKNSRATVLV 461
+ R T++V
Sbjct: 141 LSDPRCTLVV 150
>02_02_0286 - 8589736-8590857
Length = 373
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 434 KKQSSYCSRYL*XETKFCEQNNYDPEDPR 520
KK S C R +TKFC NNY PR
Sbjct: 41 KKSSPCCPRCNSIKTKFCYYNNYSMAQPR 69
>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
Length = 365
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 416 QCPGFNKKQSSYCSRYL*XETKFCEQNNYDPEDPR 520
+C G ++ C R TKFC NNY+ PR
Sbjct: 118 RCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPR 152
>04_04_1597 - 34690787-34691302,34691627-34691731
Length = 206
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 434 KKQSSYCSRYL*XETKFCEQNNYDPEDPR 520
K+Q C R TKFC NNY PR
Sbjct: 45 KQQQLECPRCRSTNTKFCYYNNYSTSQPR 73
>03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 425 GFNKKQSSYCSRYL*XETKFCEQNNYDPEDPR 520
G C R +TKFC NNY+ PR
Sbjct: 26 GVGGSSREQCPRCASHDTKFCYYNNYNTSQPR 57
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 249 AMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVD 359
++ RY+ + WAS T++ L + G P T +K +++
Sbjct: 350 SLERYMHYYERWASNQTLAKLTDVFGIPETQLKFIIE 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,429,914
Number of Sequences: 37544
Number of extensions: 406826
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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