Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C02
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF047663-1|AAC04453.2|  322|Caenorhabditis elegans Delta/serrate...    29   3.4  

>U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical
           protein F37A4.6 protein.
          Length = 389

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +3

Query: 357 DGSLANSTGVPYFYMSPLDFSARDLTKNSRATVLVIFXKKPNFVN 491
           DGS  +S+  P+FY+SP + S  D  K+SR+   VI  K P+ +N
Sbjct: 102 DGS--SSSSQPHFYLSPSNSSLFDARKSSRSRGAVI--KSPSTIN 142


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 574 ITAFLDLXHFTGEHQSRTTWIFRVIVVLFTKFGFXLKITRTVARLF 437
           IT F+ L + T  H  R    ++++VV+F+  GF   ++  +AR F
Sbjct: 20  ITNFI-LIYITLFHSKRIYGTYKLMVVMFSALGFLFSVSEFIARPF 64


>AF047663-1|AAC04453.2|  322|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein2 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 449 YCSRYL*XETKFCEQNNYDPEDPRCTRLML--SGKMXKVKEGSD 574
           YC      E K+C+   + PE P+   +ML  +GK+ KV E  +
Sbjct: 197 YCECLTGFEGKYCQNVTFPPEMPKFRTVMLGANGKIFKVLENKN 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,028
Number of Sequences: 27780
Number of extensions: 353669
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)