Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_C01
         (980 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0080 + 587674-588510                                             30   3.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.3  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     29   7.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   9.9  
05_01_0142 - 940421-940701,941262-941574                               28   9.9  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    28   9.9  

>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 816 PXPGXXXGXPXPXPPXPXXPPP 881
           P P    G P P PP P  PPP
Sbjct: 95  PPPPPSSGSPPPPPPPPPPPPP 116


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 482 PAPPKXETXXPPXPGQXPRKXXXXKXPXSGPXPXXRXRXXGP 607
           P PP  +   PP P + P      K P   P P    +  GP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 482 PAPPKXETXXPPXPGQXPRKXXXXKXPXSGPXPXXRXRXXGP 607
           P+PPK +    P P   P+     K P  GP P  +    GP
Sbjct: 167 PSPPKPKPGPKPKP---PKPGPKPKPPKPGPKPKPKPPKPGP 205



 Score = 28.3 bits (60), Expect = 9.9
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +2

Query: 482 PAPPKX-ETXXPPXPGQXPRKXXXXKXPXSGPXPXXRXRXXGP 607
           P PPK      PP PG  P+     K P  GP P  +    GP
Sbjct: 178 PKPPKPGPKPKPPKPGPKPKP----KPPKPGPKPKPKPPKPGP 216


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 816 PXPGXXXGXPXPXPPXPXXPPP 881
           P P      P P PP P  PPP
Sbjct: 112 PPPSPPPSAPPPPPPPPTQPPP 133


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 807 AFXPXPGXXXGXPXPXPPXPXXPPPXXXXXXXXXXPPXXG 926
           A+ P PG     P   PP P   PP          PP  G
Sbjct: 46  AYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 816 PXPGXXXGXPXPXPPXPXXPPPXXXXXXXXXXPP 917
           P P      P P PP P  PPP          PP
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387



 Score = 28.3 bits (60), Expect = 9.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 816 PXPGXXXGXPXPXPPXPXXPPPXXXXXXXXXXPP 917
           P P      P P PP P  PPP          PP
Sbjct: 357 PPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,569
Number of Sequences: 37544
Number of extensions: 203211
Number of successful extensions: 1246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)