Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B24
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.92 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.8  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   3.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 537 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 647
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 440 VHKLNRVFGEDKSELNWETIPDDVL 366
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 266 KKSEVITNVVNKLIRNNXMNCMEYAYQLWLQGL 364
           K+   +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 194 QLYNSVVVADYDSAVEKSKHLYEEKKS 274
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 59  IAVLVCNTQD--STLLKMICPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVAD 223
           I++LV  T+D  S + +M+C ++  LCL+  +L +  S    ++ +   Y   ++++
Sbjct: 446 ISLLVQYTKDYHSEIAQMLCCSLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISN 502


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +1

Query: 343 STLAPGXPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATART 522
           ST+AP    TSSG  +      SS  T LS  T A  S    +  F  T + LPT++A T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFT-SSGFNTT-SGLPTSSAST 669

Query: 523 RQARES 540
             +  S
Sbjct: 670 PSSNSS 675


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 522 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 638
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 385 VSQLSSDLSSPKTRLSLCTSATV 453
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 364 PRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 456
           P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,695
Number of Sequences: 5004
Number of extensions: 56178
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)