Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B23
         (970 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0998 - 10136050-10138356                                         29   7.4  
06_03_1237 + 28602250-28604196                                         29   7.4  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    29   7.4  
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561...    28   9.7  
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    28   9.7  

>08_01_0998 - 10136050-10138356
          Length = 768

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 138 GVLADDFSQITAVVTSQCTKNNAEDKVPXS*SSIAYLWKLPQGTGRF 278
           GV+  +   +TA+ T     N  E +VP S SS+  L+ L     RF
Sbjct: 298 GVIPPEIFNLTALRTIDVGTNRLEGEVPASISSLRNLYGLDLSNNRF 344


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 245 VRNAASTXRDFVFSIVLGALRGHNRCNLTKVISQH 141
           VR+ + T    V+  +LGA R H +  + KV+++H
Sbjct: 435 VRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEH 469


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 583 KQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLERVFHTDTRKHGGITDQVHAQRLSLPH 762
           + S P+  S  ++   E  AKVD+M +     L  + +  TR   G+  +   + ++ P 
Sbjct: 447 RYSGPSKRSRTSIEKAETSAKVDQMDNSCFLPLSEIINVPTRLQKGLDKK--PKSINSPP 504

Query: 763 RSAQNR-LIAPSD 798
           R   N   ++P+D
Sbjct: 505 RPQDNETCLSPTD 517


>06_03_1494 +
           30554997-30555608,30555707-30555915,30556006-30556155,
           30556254-30556312,30556852-30556961,30557216-30557322,
           30557443-30557581,30557705-30557821,30557918-30558025,
           30558221-30558292,30558783-30558948,30559044-30559165,
           30559245-30559382,30559462-30559604,30559699-30559761,
           30560107-30560170,30560238-30560373,30560478-30560551,
           30560640-30560734,30560829-30560860,30560973-30561175
          Length = 972

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 713 CL-RVSVWNTLSRDFTIQEVISSTFA 639
           CL RV  WN +++DF ++ V+ S +A
Sbjct: 549 CLPRVGQWNMMNKDFALEPVLPSMYA 574


>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 298 IEEAKPNGALDEVF-KKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNSTNQLID 474
           I+ A P+G   + F KK    + Q    +S ++Q +      +Y    N+A+ +TN L+D
Sbjct: 421 IDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLD 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,070,520
Number of Sequences: 37544
Number of extensions: 479465
Number of successful extensions: 1336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)