Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B23
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   5.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   9.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +1

Query: 622 SLVEKCAKVDEMTSCIVKSLERVFHTDTRKHGGITDQVHAQRLSLPHRSAQNRLIAPSDF 801
           S + KC  V    +  VK L   +HTD  +     D    + L LP      R + P D 
Sbjct: 119 SAILKCV-VPSFVADFVKVLS--WHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPEDG 175

Query: 802 FR*Y*CIT 825
           ++ Y C T
Sbjct: 176 YKTYQCRT 183


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 661 SCIVKSLERVFHTDTRKHGGITDQVHAQRLSLPHR 765
           S  +K LER++  DT  + G    VH   +++P++
Sbjct: 108 SLSIKMLERIWRPDTYFYNGKHSYVHT--ITVPNK 140


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 712 VCGCRCGTLFRGISRYRRSSHQLLRIFQQGSSYWRIPQWGSSVSN 578
           +C C C      + R    S   +R  +  S   ++PQ G+S+ +
Sbjct: 77  ICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDD 121


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 712 VCGCRCGTLFRGISRYRRSSHQLLRIFQQGSSYWRIPQWGSSVSN 578
           +C C C      + R    S   +R  +  S   ++PQ G+S+ +
Sbjct: 525 ICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGASIDD 569


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 793 TVQSVCFGQSGVARRV 746
           TVQSVC  + G A+++
Sbjct: 28  TVQSVCMKEIGTAQQI 43


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 541 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 633
           +Q+T++L   F  L++  PT+ S + LS ++
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS-DKLSKIQ 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,304
Number of Sequences: 438
Number of extensions: 4429
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)