Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_B19
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma transl... 42 0.004
BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma transl... 42 0.004
AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein. 42 0.004
AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein. 42 0.004
AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein. 42 0.004
AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2... 42 0.004
AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1... 42 0.004
AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein... 41 0.005
X79201-1|CAA55792.1| 391|Homo sapiens SYT protein. 38 0.036
CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein. 38 0.036
CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein. 38 0.036
BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma transl... 38 0.036
BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma transl... 38 0.036
AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2... 38 0.036
AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1... 38 0.036
AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protei... 38 0.063
DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein. 36 0.19
BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif prote... 36 0.19
AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif prote... 36 0.19
Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein. 35 0.33
U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein. 35 0.44
M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2 ... 35 0.44
M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein. 35 0.44
D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein. 35 0.44
D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein. 35 0.44
U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein. 34 0.58
BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear r... 34 0.58
AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens ... 34 0.58
BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif prote... 34 0.77
BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif prote... 34 0.77
AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear r... 34 0.77
AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif prote... 34 0.77
AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens ... 34 0.77
AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein. 34 0.77
X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein. 33 1.0
U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding prot... 33 1.0
BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II... 33 1.0
AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II... 33 1.0
AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear r... 33 1.0
AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein. 33 1.0
AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein. 33 1.0
BX322635-2|CAI42531.1| 693|Homo sapiens TSPY-like 2 protein. 31 5.5
BC024270-1|AAH24270.1| 693|Homo sapiens TSPY-like 2 protein. 31 5.5
BC001566-1|AAH01566.1| 338|Homo sapiens TSPYL2 protein protein. 31 5.5
AY040871-1|AAK72407.1| 693|Homo sapiens cell division autoantig... 31 5.5
AF457207-1|AAL91370.1| 419|Homo sapiens pygopus 1 protein. 31 5.5
AF273046-1|AAG34906.1| 693|Homo sapiens CTCL tumor antigen se20... 31 5.5
AF254794-1|AAG53596.1| 633|Homo sapiens differentially expresse... 31 5.5
AB209182-1|BAD92419.1| 334|Homo sapiens TSPY-like 2 variant pro... 31 5.5
AB015345-1|BAA34802.1| 486|Homo sapiens HRIHFB2216 protein. 31 5.5
D55674-1|BAA09525.1| 355|Homo sapiens heterogeneous nuclear rib... 30 9.5
D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear rib... 30 9.5
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 30 9.5
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 30 9.5
BC002401-1|AAH02401.1| 355|Homo sapiens heterogeneous nuclear r... 30 9.5
AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear r... 30 9.5
AF026126-1|AAC23474.1| 355|Homo sapiens heterogeneous nuclear r... 30 9.5
AC124016-1|AAY40913.1| 355|Homo sapiens unknown protein. 30 9.5
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 30 9.5
>BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 665 IPRQSY 682
P Q Y
Sbjct: 306 -PEQGY 310
>BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 665 IPRQSY 682
P Q Y
Sbjct: 306 -PEQGY 310
>AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein.
Length = 422
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 665 IPRQSY 682
P Q Y
Sbjct: 310 -PEQGY 314
>AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein.
Length = 414
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 665 IPRQSY 682
P Q Y
Sbjct: 310 -PEQGY 314
>AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 665 IPRQSY 682
P Q Y
Sbjct: 310 -PEQGY 314
>AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 488
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 665 IPRQSY 682
P Q Y
Sbjct: 306 -PEQGY 310
>AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 488
Score = 41.5 bits (93), Expect = 0.004
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 305
Query: 665 IPRQSY 682
P Q Y
Sbjct: 306 -PEQGY 310
>AF257500-1|AAG31034.1| 492|Homo sapiens SYT/SSX4 fusion protein
protein.
Length = 492
Score = 41.1 bits (92), Expect = 0.005
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMRQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P +N+ YG +QP +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHND---YGYQQPSY 309
Query: 665 IPRQSY 682
P Q Y
Sbjct: 310 -PEQGY 314
>X79201-1|CAA55792.1| 391|Homo sapiens SYT protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 252
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 253 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 309
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 310 QGPPPQQGYPPQQQQY 325
>BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 457
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 457
Score = 38.3 bits (85), Expect = 0.036
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q +
Sbjct: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAY 305
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 306 QGPPPQQGYPPQQQQY 321
>AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protein
protein.
Length = 369
Score = 37.5 bits (83), Expect = 0.063
Identities = 39/136 (28%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Frame = +2
Query: 341 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ----- 502
N+GPRPNM M N P Y+ G Q+ G N GN
Sbjct: 165 NYGPRPNMSMQPNQGPMMHQQPPSQQYDMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 224
Query: 503 --PPKKNNFNGDKSPGNMQ---YGNKNDFGGP-KQQNYNKNYGPKTYNNQNCYGNEQPEF 664
PP + G + Q YG++ GG + N+ Y P N+Q YG +Q F
Sbjct: 225 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDG-NSQ--YGQQQDAF 281
Query: 665 ---IPRQSYSPNSVQH 703
P+Q Y P Q+
Sbjct: 282 QGPPPQQGYPPQQQQY 297
>DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein.
Length = 384
Score = 35.9 bits (79), Expect = 0.19
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 460
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 461 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 631
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.19
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 460
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 461 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 631
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.19
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGG----P 460
G+ P +G +GGP P P+ + PR+D K+ Y++++ + D P
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 461 KQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNN 631
+ + R+ ++ ++ + GD+ YG D+ P +Y +Y ++Y N
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRD----GYGRDRDYSDHPSGGSYRDSY--ESYGN 290
>Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein.
Length = 391
Score = 35.1 bits (77), Expect = 0.33
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPP- 237
Query: 464 QFRPRN-NFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG-PKQQNYNKNYGPKTYNNQN 637
PR+ + + ++++ + YG D+ P +Y +Y ++Y N
Sbjct: 238 ---PRDYTYRDYGHSSSRDDYPSREYSDRDGYGRDRDYSDHPSGGSYRDSY--ESYGNSR 292
Query: 638 CYGNEQPEFIPRQSYSPNS 694
+ P P SY +S
Sbjct: 293 ---SAPPTRGPPPSYGGSS 308
>U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein.
Length = 341
Score = 34.7 bits (76), Expect = 0.44
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 508
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 509 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 679
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2
protein mRNA. ).
Length = 341
Score = 34.7 bits (76), Expect = 0.44
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 508
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 509 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 679
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein.
Length = 353
Score = 34.7 bits (76), Expect = 0.44
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 508
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 214 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 260
Query: 509 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 679
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 318
>D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein.
Length = 341
Score = 34.7 bits (76), Expect = 0.44
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 508
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 202 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 248
Query: 509 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 679
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 306
>D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein.
Length = 353
Score = 34.7 bits (76), Expect = 0.44
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Frame = +2
Query: 329 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 508
GG NFGP P NFR +D + DG GGP NF P
Sbjct: 214 GGGGNFGPGPG---SNFRGGSDGYGSGRGFG---DGYNGYGGGPGG----GNFGGS---P 260
Query: 509 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNK-NYGPKTYNNQNCYGNEQPEFIPRQS 679
G G YGN+ G NY NYG YN+ Y + + P +S
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKS 318
>U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.58
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 476 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 652
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 244 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 301
Query: 653 QPEFIPRQSYSPNSVQHSLNDRK 721
+ P YS S + + R+
Sbjct: 302 ---YGPGYDYSQGSTNYGKSQRR 321
>BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.58
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 476 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 652
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 653 QPEFIPRQSYSPNSVQHSLNDRK 721
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSQRR 322
>AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ40338 fis, clone TESTI2032067, highly similar to
Rattus norvegicus mRNA for type A/B hnRNP protein p40.
).
Length = 332
Score = 34.3 bits (75), Expect = 0.58
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 476 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 652
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 653 QPEFIPRQSYSPNSVQHSLNDRK 721
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSQRR 322
>BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear
ribonucleoprotein G protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens
cDNA FLJ38696 fis, clone KIDNE2001931, highly similar to
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G. ).
Length = 378
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 166 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 225
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 226 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 276
>AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein.
Length = 391
Score = 33.9 bits (74), Expect = 0.77
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +2
Query: 293 GKIPYIKGLPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTK---NDGNQNDFGGPK 463
G+ P +G +GGP P P+ + PR+D K+ Y+++ + + D+ P
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 464 Q---FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYG 613
+ +R + ++ + P + + D + Y + + GG + +Y ++YG
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD-HPSGGSYRDSY-ESYG 289
>X98893-1|CAA67398.1| 589|Homo sapiens hTAFII68 protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>U51334-1|AAC50932.1| 592|Homo sapiens putative RNA binding protein
RBP56 protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>BC046099-1|AAH46099.2| 592|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>AY197697-1|AAO13485.1| 589|Homo sapiens TAF15 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 68kD
protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein AB isoform a variant protein.
Length = 332
Score = 33.5 bits (73), Expect = 1.0
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 476 RNNFNNGNQPPKKNNFNGDKSPG-NMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNCYGNE 652
R N N GN+ G +S N YGN + G QQ Y YG Y+ YG
Sbjct: 245 RGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYG-- 302
Query: 653 QPEFIPRQSYSPNSVQHSLNDRK 721
+ P YS S + + R+
Sbjct: 303 ---YGPGYDYSQGSTNYGKSRRR 322
>AB010067-2|BAA33812.1| 589|Homo sapiens RBP56/hTAFII68 protein.
Length = 589
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 358 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 417
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 418 DRSGGG--YGGDRSSGG 432
>AB010067-1|BAA33811.1| 592|Homo sapiens RBP56/hTAFII68 protein.
Length = 592
Score = 33.5 bits (73), Expect = 1.0
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 350 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 529
P P+ N NF RN N+ + + DF G R G + + + G
Sbjct: 361 PNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGG 420
Query: 530 DKSPGNMQYGNKNDFGG 580
D+S G YG GG
Sbjct: 421 DRSGGG--YGGDRSSGG 435
>BX322635-2|CAI42531.1| 693|Homo sapiens TSPY-like 2 protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>BC024270-1|AAH24270.1| 693|Homo sapiens TSPY-like 2 protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>BC001566-1|AAH01566.1| 338|Homo sapiens TSPYL2 protein protein.
Length = 338
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 128 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 186
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 187 NFFKGGFWGSHGNNQDSSDSDNE 209
>AY040871-1|AAK72407.1| 693|Homo sapiens cell division autoantigen
1 nucleolar protein protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>AF457207-1|AAL91370.1| 419|Homo sapiens pygopus 1 protein.
Length = 419
Score = 31.1 bits (67), Expect = 5.5
Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 14/173 (8%)
Frame = +2
Query: 236 GFHNQHPIFRPQPDRNEQFGKIPYIKGLPDFGGPKNFGPRPNMMNKNFR--PRNDFNEVK 409
GF+ H F P N FG Y L N R N +NF P + ++V
Sbjct: 139 GFNRPHA-FNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPA-ENFSQIPPQNASQVS 196
Query: 410 NDYNTKN--DGNQNDFGGPKQFR-----PRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN 568
N N GN ++F P + P N F PP K +F + G + N+N
Sbjct: 197 NPDLASNFVPGNNSNFTSPLESNHSFIPPPNTFGQAKAPPPKQDF----TQGATKNTNQN 252
Query: 569 DFGGPKQQNYN-----KNYGPKTYNNQNCYGNEQPEFIPRQSYSPNSVQHSLN 712
P N + N K N N E ++ + N + N
Sbjct: 253 SSAHPPHLNMDDTVNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPANGTQN 305
>AF273046-1|AAG34906.1| 693|Homo sapiens CTCL tumor antigen se20-4
protein.
Length = 693
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 483 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 541
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 542 NFFKGGFWGSHGNNQDSSDSDNE 564
>AF254794-1|AAG53596.1| 633|Homo sapiens differentially expressed
nucleolar TGF-beta1 target protein protein.
Length = 633
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 423 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 481
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 482 NFFKGGFWGSHGNNQDSSDSDNE 504
>AB209182-1|BAD92419.1| 334|Homo sapiens TSPY-like 2 variant
protein.
Length = 334
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 123 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 181
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 182 NFFKGGFWGSHGNNQDSSDSDNE 204
>AB015345-1|BAA34802.1| 486|Homo sapiens HRIHFB2216 protein.
Length = 486
Score = 31.1 bits (67), Expect = 5.5
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ--YGNK 565
D NEV N+ T N+ + +D ++ N + KN + +++P N + YGN
Sbjct: 276 DHNEVPNNETTDNNESADDHETTDNNESADDNNENPEDNNKNTDDNEENPNNNENTYGN- 334
Query: 566 NDFGGPKQQNYNKNYGPKTYNNQ 634
N F G ++ N +N+
Sbjct: 335 NFFKGGFWGSHGNNQDSSDSDNE 357
>D55674-1|BAA09525.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 355
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 316
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 317 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 354
>D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 267
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 172 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 228
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 229 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 266
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 410 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 562
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1130 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1180
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 410 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 562
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1130 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1180
>BC002401-1|AAH02401.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (AU-rich element RNA binding protein
protein.
Length = 355
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 316
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 317 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 354
>AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 336
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 297
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 298 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 335
>AF026126-1|AAC23474.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 355
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 316
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 317 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 354
>AC124016-1|AAY40913.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 30.3 bits (65), Expect = 9.5
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Frame = +2
Query: 407 KNDYNTKND-GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN--DFG 577
K Y + G++ F G + R N NQ N +N + GN Y ++ +G
Sbjct: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQG-YSNYWN--QGYGNYGYNSQGYGGYG 316
Query: 578 GPKQQNYNKNYGPKTYNNQNC-YGNEQPEFIPRQSYSP 688
G YN YG Y+NQ YG + SY P
Sbjct: 317 GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKP 354
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 410 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 562
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1219 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,264,281
Number of Sequences: 237096
Number of extensions: 2418847
Number of successful extensions: 5733
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 5408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5714
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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