Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B18
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    33   0.40 
09_04_0734 + 19796297-19796329,19796866-19797129                       29   4.9  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    29   4.9  
06_03_1506 + 30641428-30642168                                         29   6.5  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    28   8.6  

>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 316 TTFTKKSLVALSQSPEDLPSPHFLVPSDKVVNIAE 212
           TTF +++  A S +PE+LP P  ++  D+VV + +
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVVLLGD 267


>09_04_0734 + 19796297-19796329,19796866-19797129
          Length = 98

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 242 DKEMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGP-GGDST 406
           ++E GGG  FG  GE   G  G G     +       LTG   G  V G   GD+T
Sbjct: 35  EEECGGGVSFGAAGEDGHGGDGDGDGVNAYLRFPGPTLTGSGDGGVVGGEVDGDAT 90


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 275 TLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 418
           T  +   G+ G GG+    +    G  +G  YGT   G GG     GG
Sbjct: 106 TANDRAGGIRGGGGFGAGGYGSGGGYSSGGGYGTGEYGRGGGYAGNGG 153


>06_03_1506 + 30641428-30642168
          Length = 246

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 254 GGGKVFGTLGESDQGLFGKG-GYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 418
           GGG  +G+ G    G +G+G GY         G   G   G+   G GG  + YGG
Sbjct: 73  GGGGGYGSGGGEGNGAYGQGYGYGSGNGGGGGGGYGGGGGGS--YGSGGMGSGYGG 126


>04_04_1183 -
           31537196-31537290,31537665-31537986,31538176-31538277,
           31538826-31539071,31539385-31539506,31539588-31540344,
           31540447-31540770,31540872-31541052,31541208-31541602,
           31541877-31541942,31542225-31542377,31542593-31542691,
           31542776-31542982,31543432-31543572,31543852-31544019,
           31544302-31544395,31544479-31544585,31545140-31545274,
           31545549-31545656,31545975-31546049,31546197-31546262,
           31546500-31546556,31546678-31546702,31546809-31546889,
           31546966-31547080,31547211-31547370,31547444-31547483,
           31547599-31547780,31547905-31548234
          Length = 1650

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = -1

Query: 807 MLDECW*LKEEITER-R*IVTNQSIFITIFLDKILFILLGLTRQE 676
           + D+C  +KEE+  + R +VTNQ  F+  ++DKIL +  G+ ++E
Sbjct: 804 VFDKC--IKEELQHKTRVLVTNQLHFLP-YVDKILVVHDGVIKEE 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,744,298
Number of Sequences: 37544
Number of extensions: 475281
Number of successful extensions: 1304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)