Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B18
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    31   0.82 
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    29   3.3  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   4.4  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 103 NTLEYILNCDRFRCSRQEC 47
           NT++  +NCD FRCS  EC
Sbjct: 149 NTIDTPMNCDHFRCSFNEC 167


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 254 GGGKVFGTLGESDQGLFGKGGY-NREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLDW 430
           GGG      G+     F +GGY NR+  +D+RG  +G++Y       GGD    G    W
Sbjct: 55  GGGYNRQDRGDGGSSNFSRGGYNNRDEGSDNRG--SGRSYNNDRRDNGGD----GQNTRW 108

Query: 431 ANENA 445
            N +A
Sbjct: 109 NNLDA 113


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +2

Query: 254 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 418
           GGG   G  G    G +G GG+         G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 772 YRTQINSYKSIDFYNNFFRQNFIHTSR 692
           ++ QI  Y  I F +  FRQN +HT++
Sbjct: 59  FKMQIRQYVMIPFNSPIFRQNQLHTTK 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,197,541
Number of Sequences: 27780
Number of extensions: 388535
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)