Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B18
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.92 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    24   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.9  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.5  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 784 KRGNYRTQINSYKSIDFYNNFFRQNF 707
           K  NY    N+Y + + YNN +  N+
Sbjct: 323 KYSNYNNYNNNYNNYNNYNNNYNNNY 348


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 596 LQAQITHEW*LPTPLSKQLYKCRLDKHSCLVKP-RSMNKILSKKIVIKID*FVTIYLRSV 772
           L A + H      P +K+LY   L  ++ LV+P  + + +L   I +K+   + + L++ 
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73

Query: 773 ISSFN 787
           I + N
Sbjct: 74  IMTTN 78


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 596 LQAQITHEW*LPTPLSKQLYKCRLDKHSCLVKP-RSMNKILSKKIVIKID*FVTIYLRSV 772
           L A + H      P +K+LY   L  ++ LV+P  + + +L   I +K+   + + L++ 
Sbjct: 14  LSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73

Query: 773 ISSFN 787
           I + N
Sbjct: 74  IMTTN 78


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 341 DRGKLTGQAYGTRVLGPGGDSTSYGG 418
           D+  +TG AYG   + PG  S  + G
Sbjct: 66  DKNGMTGDAYGGLNIRPGQPSRQHAG 91


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 446 WRSHWPSLDDHRNWY 402
           W +H P+ D   NWY
Sbjct: 661 WLNHSPNYDQVTNWY 675


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 221 YRRGCQTDFENWLVIGYF 168
           Y RG + D+E W+  G F
Sbjct: 161 YHRGHRKDYERWVQQGAF 178


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 656 KCRLDKHSCLVKPRSMNKIL 715
           KC LD+  C  + R + KIL
Sbjct: 45  KCMLDEGPCTNEGRELKKIL 64


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 656 KCRLDKHSCLVKPRSMNKIL 715
           KC LD+  C  + R + KIL
Sbjct: 45  KCMLDEGPCTNEGRELKKIL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,922
Number of Sequences: 438
Number of extensions: 4829
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)