Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B17
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine re...    30   2.6  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical ...    29   4.5  
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    29   5.9  
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    29   5.9  

>U00033-9|AAC48293.1|  323|Caenorhabditis elegans Hypothetical
           protein F37C12.1 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 62  LQSNTXYRYXHRGXXFNVXYAVTXASTVLVCFATFDFKFYCWCSECLLQI 211
           +Q NT + Y ++G  FN+        T L       F+FY  C  CL +I
Sbjct: 43  MQCNTCHEYIYKGKKFNMKRETAEGETYLGLKL---FRFYFRCPNCLAEI 89


>AF024494-9|AAB70333.1|  336|Caenorhabditis elegans Serpentine
           receptor, class u protein27 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 631 IFSSHISLIHCVIVERPF*QEKIFTTILCAGMPF--VYPFKSGFFDHFIHPGTPF 473
           IF   +S +  V++  P  QEKI   IL + +PF  +YP    FF  F+ P   +
Sbjct: 128 IFPFLVSTMRLVLIAYPQRQEKINRVILKSALPFILIYPM---FFTFFMWPAVGY 179


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 234 QDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSD 335
           Q  E+ K DLKLI++H   + +Q KH +V  D+D
Sbjct: 85  QCLELVKEDLKLIMEHHNVVIEQFKHEIVDDDND 118


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
 Frame = -3

Query: 519 SNQVSLTILYTPEHLSCS-SQLH*KVFLL---DMKVDLIHHKNLK-TVFRLLNSIS 367
           SNQ+  T+L     LSC  + +   VF L   D+K++LIHH+++K T    L+S++
Sbjct: 36  SNQIFATLLNNRFLLSCELNDIKGLVFNLTDVDLKMNLIHHESMKMTKSHCLDSLA 91


>AL021386-2|CAA16165.1|  240|Caenorhabditis elegans Hypothetical
           protein F57E7.2 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 210 YWLKKHSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSDYHSIDDLARMVIW 374
           +W  + ++ DY V K D ++    + K S   KHL+   +S   ++  +A +  W
Sbjct: 43  FWYNRSAMSDYSVPKLDSEVQYLIVVKNSSLTKHLIRKLESYNWTLPAIATLDKW 97


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -3

Query: 489 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 373
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 270 TKEHLSLALSLHVPVYLVVTKIDMCPAYILEETMKNITRLVRS 312


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -3

Query: 489 TPEHLSCSSQLH*KVFLLDMKVDL----IHHKNLKTVFRLLNS 373
           T EHLS +  LH  V+L+  K+D+    I  + +K + RL+ S
Sbjct: 269 TKEHLSLALSLHVPVYLVVTKIDMCPANILEETMKNITRLVRS 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,404
Number of Sequences: 27780
Number of extensions: 385413
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)