Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B16
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    27   5.3  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   7.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   9.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 22/83 (26%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
 Frame = +1

Query: 631 APXGPPXXTGPXFXXFXLRPPPPRXXNXKXPXXLXGGRPP-GRAXXXSPXSXPXGTPP-- 801
           A   PP    P      LRPP         P       PP        P S P    P  
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179

Query: 802 PASXPXXXPFWPXPXXPXXPLFP 870
           P   P   P  P    P  P  P
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVP 202


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 24/106 (22%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
 Frame = +1

Query: 553  VSPPXGGXXPXXPGGGAPQKXXF*GLAPXGPPXXTGPXFXXFXLRPPPPRXXNXKXPXXL 732
            +  P G      P G  P         P   P    P        PP P+      P  +
Sbjct: 1076 IPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPV 1135

Query: 733  XGGRP--PGRAXXXSPXSXPXGTPPPASXPXXXPFWPXPXXPXXPL 864
              G P  P  +    P   P G PP        P  P P     P+
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 27/82 (32%), Positives = 27/82 (32%)
 Frame = -1

Query: 884 PPPXRGXRGXXGFXGXGQKGXXXGXEAGGGVPXGXEXGXXXXARPGGRPPXXXXGXFXXX 705
           PP   G  G  GF G G      G   GG  P G E G       GG P     G     
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGF---GGGPGGFGGGL---- 251

Query: 704 XRGGGGRRXKXXKXGPVXXGGP 639
             GG G        GP   GGP
Sbjct: 252 --GGFGGGPGGFGGGPGGHGGP 271


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  KKKXKKXXXKKKKEKKKKXXXXKK 151
           K+  K+   KKKKEKK+K    KK
Sbjct: 136 KESSKREKSKKKKEKKEKKDKLKK 159


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  KKKXKKXXXKKKKEKKKKXXXXKK 151
           +KK  K   K+KKEKK+K    KK
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 942 PPAXXEKQTPPRGXXKRXXPPPPP 871
           PP       PP G      PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 80  KKKXKKXXXKKKKEKKKK 133
           KKK KK   KKKK+ K+K
Sbjct: 437 KKKKKKKNNKKKKKNKRK 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,486
Number of Sequences: 5004
Number of extensions: 29335
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)