Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B16
         (971 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    29   0.16 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    28   0.49 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   4.5  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   6.0  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 38/139 (27%), Positives = 44/139 (31%), Gaps = 1/139 (0%)
 Frame = -1

Query: 881 PPXRGXRGXXGFXGXGQKGXXXGXEAGGGVPXGXEXGXXXXARPGGRPPXXXXGXFXXXX 702
           P  +G RG  G  G   +    G     G+P     G    A P G P            
Sbjct: 361 PGQKGDRGSEGLHGLKGQSGPKGEPGRDGIP-----GQPGIAGPAGAP------------ 403

Query: 701 RGGGGRRXKXXKXGPVXXGGPXGAXP*KXIFWGAPPPGXXGKXPPXGGETXAPXPNXXG- 525
            GG GR       GP    GP G    K +       G  G+  P GG+     P   G 
Sbjct: 404 GGGEGRPGAPGPKGPRGYEGPQGP---KGMDGFDGEKGERGQMGPKGGQGVPGRPGPEGM 460

Query: 524 PXXXGXGGXEGGPKXXPPP 468
           P   G  G E G    P P
Sbjct: 461 PGDKGDKG-ESGSVGMPGP 478


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
 Frame = +1

Query: 643 PPXXTGPXFXXFXLRPPPPRXXN-----XKXPXXLXGGRPPGRAXXXSPXSXPXGTPPPA 807
           PP   GP       +P PPR           P  +    PPG      P   P   PP A
Sbjct: 194 PPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQP--RPPSA 251

Query: 808 SXPXXXPFW--PXPXXPXXPL 864
                 P    P P  P  P+
Sbjct: 252 QGMQRPPMMGQPPPIRPPNPM 272


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 957 GGXGXPPAXXEKQTPPRGXXKRXXPPPPPGKXRXXGXXG 841
           G  G P    +K   P+   +R  PP PPG     G  G
Sbjct: 693 GLNGAPGEKGQKGETPQLPPQRKGPPGPPGFNGPKGDKG 731


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 681 PPPPXPPXXXXKXPXSXAGGAPPG 752
           PPP  PP      P S   G P G
Sbjct: 581 PPPAPPPPPPMGPPPSPLAGGPLG 604



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = -3

Query: 555 NXSPXPKXXXAXGXXXRGXGRGPKXKXPPPXXGAGXXXXKKXPXPPP 415
           N +P        G   R    GP    PPP  G           PPP
Sbjct: 505 NLAPNDGPPHGAGYDGRDLTGGPLGPPPPPPPGGAVLNIPPQFLPPP 551


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,756
Number of Sequences: 2352
Number of extensions: 11308
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 106063542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)