Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B15
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.52 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   2.1  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   4.8  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   8.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   8.4  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 171 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 314
           P   L+A Q+++D    S++    I   + ++   YVQ+++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 295 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKN 393
           P+  Q  P+   +PP YPI   S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 567 DHSISPKENELKALSTFFTKSCIVGKWSPDPKTNSAWKXQYNKLCSMCEHPE 722
           D S++   NE    S F T +       PDPKT S    +YN  C   +HPE
Sbjct: 70  DFSLNEMNNEFITDSFFCTTT-------PDPKTESPSFVKYNAHCD--DHPE 112


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 295 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKNRMRLSVTKQ 420
           P  + LT  TC      PI+++   ++ E + N  ++S   Q
Sbjct: 266 PSGYPLTSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQ 307


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 PPKYPIRTSSFSRSTEPMKN 393
           PPK P+R  S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,536,149
Number of Sequences: 5004
Number of extensions: 76296
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)