Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B14
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   5.8  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   5.8  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   5.8  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    28   7.7  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    28   7.7  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    28   7.7  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 644 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 495
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 644 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 495
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 644 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 495
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 639 LINPEAAAKYGIHKENDYFVYKANYSNAVLY 731
           +++P       IHKE   F YK+N   A+LY
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 257


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 639 LINPEAAAKYGIHKENDYFVYKANYSNAVLY 731
           +++P       IHKE   F YK+N   A+LY
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 241


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 639 LINPEAAAKYGIHKENDYFVYKANYSNAVLY 731
           +++P       IHKE   F YK+N   A+LY
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILY 238


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 164 WMPXFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 340
           W P      ++ L+  +D   L + +EY  I +  D+  N   + N+ A  E L++ +T
Sbjct: 385 WQPLPFPGYEEYLNIKEDCDNLPSHEEYKTIREACDVFPNYTEFINRVANYEMLEIGKT 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,311,418
Number of Sequences: 27780
Number of extensions: 343361
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)