Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B13
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          31   0.27 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    28   1.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   7.8  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 521 VEKTPVVIKTIEEYAPGLVDNVQSYAST 604
           +E+ P+  KTI E  P ++++VQS A+T
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRANT 300


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 374 REQRWTVFFLPSPVDYAQECPNL 306
           REQRW +F   + +DY  + P++
Sbjct: 263 REQRWKLFLQENGIDYIHQSPSI 285


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +2

Query: 629 SSDYYQITTDYLVTKVXVGDWAPEVLQNKTQSALNXTKVPSFIILCMVPATGSHILRETL 808
           +S  + I +  +   +  G + PEV ++   +A   T +  F +L +    G+H+L +  
Sbjct: 407 ASHPFNINSQSITNILPEGLYPPEVSESSFAAASRKTDIWCFGLLVLQMLCGAHVLNKFS 466

Query: 809 NLMLV 823
           +L L+
Sbjct: 467 SLKLI 471


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 617 LKKYSSDYYQITTDYL--VTKVXVGDWAPEVLQNKTQSALNXTKVPSFIILCMVPATGSH 790
           LK YS+    +T   L  +TK+ VGD   ++        +     P+ IIL + PA    
Sbjct: 156 LKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDI 215

Query: 791 ILRETLNL 814
           +  E L L
Sbjct: 216 VNSEGLKL 223


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 545 KTIEEYAPGLVD--NVQSYASTAWSGLKKYS--SDYYQITTDYLVTKV 676
           K +EEY  G  D  N++  +S +W   K+Y   S+ Y++  D    K+
Sbjct: 240 KIMEEYK-GKCDSENIEEASSNSWKAFKEYKLPSNVYEVLHDTRCVKI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,457
Number of Sequences: 5004
Number of extensions: 69042
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)