Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B13
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068479-1|AAH68479.1|  689|Homo sapiens hypothetical protein FL...    47   1e-04
AK074981-1|BAC11331.1|  486|Homo sapiens protein ( Homo sapiens ...    47   1e-04
AK000261-1|BAA91038.1|  431|Homo sapiens protein ( Homo sapiens ...    47   1e-04
AC013472-3|AAY14654.1|  431|Homo sapiens unknown protein.              47   1e-04
L07334-1|AAA60108.1|  342|Homo sapiens platelet activating facto...    32   3.0  
AM261745-1|CAK12620.1|  362|Homo sapiens MHC class I antigen pro...    31   7.0  

>BC068479-1|AAH68479.1|  689|Homo sapiens hypothetical protein
           FLJ20254 protein.
          Length = 689

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = +2

Query: 215 VLLVSIAGLVAYXVSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWLET 394
           +LLV   G + + + R+  +F  S TG+L +  G L  SQQ  A +  S S +GY WL  
Sbjct: 488 LLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACA-KLYSYSLQGYSWLGE 545

Query: 395 NAPVYYAQTVEICRPYTQLS 454
             P++ +  + + RP  QL+
Sbjct: 546 TLPLWGSHLLTVVRPSLQLA 565


>AK074981-1|BAC11331.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90500 fis, clone NT2RP3004025. ).
          Length = 486

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = +2

Query: 215 VLLVSIAGLVAYXVSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWLET 394
           +LLV   G + + + R+  +F  S TG+L +  G L  SQQ  A +  S S +GY WL  
Sbjct: 285 LLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACA-KLYSYSLQGYSWLGE 342

Query: 395 NAPVYYAQTVEICRPYTQLS 454
             P++ +  + + RP  QL+
Sbjct: 343 TLPLWGSHLLTVVRPSLQLA 362


>AK000261-1|BAA91038.1|  431|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20254 fis, clone COLF6926. ).
          Length = 431

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = +2

Query: 215 VLLVSIAGLVAYXVSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWLET 394
           +LLV   G + + + R+  +F  S TG+L +  G L  SQQ  A +  S S +GY WL  
Sbjct: 230 LLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACA-KLYSYSLQGYSWLGE 287

Query: 395 NAPVYYAQTVEICRPYTQLS 454
             P++ +  + + RP  QL+
Sbjct: 288 TLPLWGSHLLTVVRPSLQLA 307


>AC013472-3|AAY14654.1|  431|Homo sapiens unknown protein.
          Length = 431

 Score = 46.8 bits (106), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = +2

Query: 215 VLLVSIAGLVAYXVSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWLET 394
           +LLV   G + + + R+  +F  S TG+L +  G L  SQQ  A +  S S +GY WL  
Sbjct: 230 LLLVFAVGFLCHDL-RSHSSFQASLTGRLLRSSGFLPASQQACA-KLYSYSLQGYSWLGE 287

Query: 395 NAPVYYAQTVEICRPYTQLS 454
             P++ +  + + RP  QL+
Sbjct: 288 TLPLWGSHLLTVVRPSLQLA 307


>L07334-1|AAA60108.1|  342|Homo sapiens platelet activating factor
           receptor protein.
          Length = 342

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 80  VLSFFAPFKFSVFCNCHIFSXLLXQGSSRQHAAHXTAIPGLW-ASFVLLVSIAGLVAYXV 256
           V SFF  F   +FCN  I   LL Q   +Q  A  T    LW    VL V I   VA+ V
Sbjct: 192 VFSFFLVFLIILFCNLVIIRTLLMQPVQQQRNAEVTT-RALWMVCTVLAVFIICFVAHHV 250


>AM261745-1|CAK12620.1|  362|Homo sapiens MHC class I antigen
           protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 383 WLETNAPVYYAQTVEICRPYTQLSKDAFFIALK 481
           W+E   P Y+ +  +IC+  TQ  ++   IAL+
Sbjct: 75  WIEQEGPEYWDRNTQICKTNTQTDRENLRIALR 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,935,205
Number of Sequences: 237096
Number of extensions: 2564605
Number of successful extensions: 6949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6945
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)