Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_B13
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical pr... 35 0.084
AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein. 35 0.084
Z93391-9|CAB07683.2| 392|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81498-4|CAL63995.1| 392|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 28 7.3
X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese super... 28 7.3
X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese super... 28 7.3
U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide... 28 7.3
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 28 7.3
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 28 7.3
AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily a... 28 7.3
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 28 7.3
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 28 9.7
AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical ... 28 9.7
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 28 9.7
AC024765-1|AAF60529.2| 300|Caenorhabditis elegans Prion-like-(q... 28 9.7
>Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical
protein K08H10.1 protein.
Length = 733
Score = 34.7 bits (76), Expect = 0.084
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 452 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 631
+KD +KAG D V EK + + + ++ DNV++ AS A++ K +
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKA 609
Query: 632 SDYYQITTDYL-VTKVXVGDWAPEVLQNKTQSALNXTK 742
SD + T D K GD A + ++K +A + TK
Sbjct: 610 SDAWDKTKDKAGEAKDKAGD-AWDNTKDKAGNAWDSTK 646
>AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein.
Length = 733
Score = 34.7 bits (76), Expect = 0.084
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 452 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 631
+KD +KAG D V EK + + + ++ DNV++ AS A++ K +
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKA 609
Query: 632 SDYYQITTDYL-VTKVXVGDWAPEVLQNKTQSALNXTK 742
SD + T D K GD A + ++K +A + TK
Sbjct: 610 SDAWDKTKDKAGEAKDKAGD-AWDNTKDKAGNAWDSTK 646
>Z93391-9|CAB07683.2| 392|Caenorhabditis elegans Hypothetical
protein W04G5.7 protein.
Length = 392
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 712 ILKYLWGPITNXNFSNQIVSCDLIIIARVLFESAPGRRCIALNVVYK--TRSILFNGFNN 539
+ K+LW ITN + + I + I I+ V + S P + N+ + + F GFN
Sbjct: 332 VTKWLWQNITNCDLTVVIALYEHIWISYVYYPSVPSEPGWSCNICFDDGEKYFFFAGFNL 391
Query: 538 D 536
D
Sbjct: 392 D 392
>Z81498-4|CAL63995.1| 392|Caenorhabditis elegans Hypothetical
protein W04G5.7 protein.
Length = 392
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 712 ILKYLWGPITNXNFSNQIVSCDLIIIARVLFESAPGRRCIALNVVYK--TRSILFNGFNN 539
+ K+LW ITN + + I + I I+ V + S P + N+ + + F GFN
Sbjct: 332 VTKWLWQNITNCDLTVVIALYEHIWISYVYYPSVPSEPGWSCNICFDDGEKYFFFAGFNL 391
Query: 538 D 536
D
Sbjct: 392 D 392
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 317 ILEHSQQGLAERTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKD 460
+ HS L + + S+ YLWL T+ +A T + R QL+ D
Sbjct: 187 VTTHSSTRLVDVMRALSSEAYLWLATDD--VFAATCAVARDLQQLASD 232
>X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese
superoxide dismutase protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 254 VSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWL 388
+++ GG K + +D G L++ Q+ L++ T++ G+ WL
Sbjct: 105 LAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWL 149
>X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 254 VSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWL 388
+++ GG K + +D G L++ Q+ L++ T++ G+ WL
Sbjct: 105 LAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWL 149
>U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide
dismutase) protein3 protein.
Length = 218
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 254 VSRAGGNFPKSTTGKLFKDLGILEHSQQGLAERTLSTSARGYLWL 388
+++ GG K + +D G L++ Q+ L++ T++ G+ WL
Sbjct: 105 LAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWL 149
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 317 ILEHSQQGLAERTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKD 460
+ HS L + + S+ YLWL T+ +A T + R QL+ D
Sbjct: 187 VTTHSSTRLVDVMRALSSEAYLWLATDD--VFAATCAVARDLQQLASD 232
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 317 ILEHSQQGLAERTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKD 460
+ HS L + + S+ YLWL T+ +A T + R QL+ D
Sbjct: 187 VTTHSSTRLVDVMRALSSEAYLWLATDD--VFAATCAVARDLQQLASD 232
>AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform b protein.
Length = 648
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 318 FLSIVNRAWQKEHCPPLLAVTYGLKPMHRFTTHKLLKYVV 437
FLS V R + + C L ++ + PM R T + LL Y +
Sbjct: 290 FLSAVQRLEENKQCQGLDMRSFLMLPMQRVTRYPLLLYAI 329
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 318 FLSIVNRAWQKEHCPPLLAVTYGLKPMHRFTTHKLLKYVV 437
FLS V R + + C L ++ + PM R T + LL Y +
Sbjct: 778 FLSAVQRLEENKQCQGLDMRSFLMLPMQRVTRYPLLLYAI 817
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 32 GLLXXFCVSSSFVAGRVLSFFAPFKFSVFCNCHIFSXLLXQGSSRQHAAHXTA 190
G + FC S R F PF + C+CH S S H TA
Sbjct: 692 GFVGQFCESCESGFRRETKFGGPFNHCIKCDCHNHSNSCEAESGSCICEHNTA 744
>AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical
protein VF36H2L.1 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 353 TLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKDAFFIALKKA 487
+L S+ +L L T P + ++ +C +LS+ A+F+ LKKA
Sbjct: 45 SLLFSSLAWLGLSTVLPDTFLLSLTVCIIAQELSRVAYFMLLKKA 89
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 634 ARVLFESAP--GRRCIALNVVYKTRSILFNGFNNDRR 530
+RV+ SAP C A V + T+ ILF G +N RR
Sbjct: 183 SRVIISSAPYPSAMCYASLVTWGTQLILFGGNDNRRR 219
>AC024765-1|AAF60529.2| 300|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 82
protein.
Length = 300
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 352 SFCQALLTMLKNAQIFEQLSRCTLREVSSSPRHXISYQTSNADQQNKAGPQXRDCCXVRG 173
++CQ L L AQ + TLREV + P I Q S QQ Q R +R
Sbjct: 33 NYCQQLQNQLVQAQNQANSANMTLREVLNKP--SILQQPSQQQQQYPVQQQNRQRQVIRQ 90
Query: 172 ML 167
++
Sbjct: 91 II 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,807,495
Number of Sequences: 27780
Number of extensions: 394856
Number of successful extensions: 1048
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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