Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B12
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    32   0.70 
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291...    29   3.8  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   3.8  
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    29   3.8  
12_02_0504 - 19771191-19772134,19772210-19774892                       29   6.6  

>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 713 WTYPNNEDRIAYLTEDVGLNAYYYYFHSHLPFWWNSGNTE---LSGTSW 850
           W      D IA ++ + GL   + + H      WNSGNTE   L+G +W
Sbjct: 231 WANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNTEIDVLNGIAW 279


>05_04_0191 +
           18927302-18927707,18928747-18928979,18929062-18929127,
           18929262-18929340,18929935-18930014,18930099-18930122,
           18930254-18930375,18930902-18931109,18931960-18932006,
           18932914-18932998,18933292-18933355,18933488-18933609
          Length = 511

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 634 DEKICYNYGIIKENEQFVM-YANYSNSLDL 720
           DE +C+ YG ++ENE +++ + +  N L+L
Sbjct: 459 DEVLCWLYGTVRENEDYILQFVHPFNRLEL 488


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 269  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 367
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 291 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 467
           +  Y  +  M   G +P  L++++F      +EA+    L +Y   F+     A +A  Y
Sbjct: 197 LNVYPYYDYMRSNGVIP--LDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAYFAMAY 254

Query: 468 MNQWNVLIRLLHSYYP 515
           +N  NV + +  + +P
Sbjct: 255 LNVTNVPVMVTETGWP 270


>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -3

Query: 645 YFLVKATIHHLNVVHFIXNFHVDKILRISFVWSR*NEAGGVRALDNS-YVVGV*EHSTGS 469
           YF     +  L+ +H   N  + KIL+I  + S   E  G+   +N  + + V  + TG 
Sbjct: 652 YFNYIHKLQSLHCLHVPENIMLSKILQIGMLTSL-QELHGIGVAENDGHSMSVLSNLTGL 710

Query: 468 CRLWRSMLFCRNIQN 424
           CRL  S+   +N++N
Sbjct: 711 CRL--SLRNLQNVRN 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,213
Number of Sequences: 37544
Number of extensions: 410412
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)