Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B10
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.93 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.93 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 341 YFPAMVPNSKNAPVIVWLQGG 403
           Y PA    S++ PVI W+ GG
Sbjct: 111 YVPADRTPSQSLPVIFWIHGG 131


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 341 YFPAMVPNSKNAPVIVWLQGG 403
           Y PA    S++ PVI W+ GG
Sbjct: 111 YVPADRTPSQSLPVIFWIHGG 131


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 55  DVVTRVRYDMYQ 90
           DVVT++RY+++Q
Sbjct: 467 DVVTKLRYEVFQ 478


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 55  DVVTRVRYDMYQ 90
           DVVT++RY+++Q
Sbjct: 435 DVVTKLRYEVFQ 446


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
 Frame = +2

Query: 239 RRLARVPFTESLRIKSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATS 418
           R+ +  PFT S  + S   Y  +NK    ++ F Y   M+   +    ++  +G P    
Sbjct: 561 RQSSESPFTTSTIMPSDIFYDKLNKAIGGSEPFTYSEKMLGFPER---LILPRGKPEGMR 617

Query: 419 LYGLFTENGPLRVRNKKFERRKYNWALSHHIIY---IDNPXWHW 541
               F  +       K +E   Y        ++   +D P W W
Sbjct: 618 YKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAW 661


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
 Frame = +2

Query: 239 RRLARVPFTESLRIKSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATS 418
           R+ +  PFT S  + S   Y  +NK    ++ F Y   M+   +    ++  +G P    
Sbjct: 561 RQSSESPFTTSTIMPSDIFYDKLNKAIGGSEPFTYSEKMLGFPER---LILPRGKPEGMR 617

Query: 419 LYGLFTENGPLRVRNKKFERRKYNWALSHHIIY---IDNPXWHW 541
               F  +       K +E   Y        ++   +D P W W
Sbjct: 618 YKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFGFPLDRPMWAW 661


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = -2

Query: 369 LLF-GTIAGKYQKNW 328
           LLF GT+A  +Q NW
Sbjct: 8   LLFAGTVAADFQHNW 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,323
Number of Sequences: 438
Number of extensions: 5788
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)