Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B08
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    32   0.097
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.39 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   8.4  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    26   8.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   8.4  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 117 TAWRRSSAAPQVLPWLVTLAVSPLRPRSVPYVRESMLDTHSLWSNLAN-EMQHLDDMMKE 293
           T W+   +  Q LPWL+T      +  ++P   + M+    LW    N  ++ LD  +++
Sbjct: 148 TQWQPIISDRQFLPWLITPPSEEEQKLAIPITSQQMVRLEELWRKDPNANLEDLDKPIED 207

Query: 294 LSLKFPSI 317
            SL  PS+
Sbjct: 208 DSL--PSV 213


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 237 SLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 335
           +L S L      LDD+ K L+L FP++I + RV
Sbjct: 167 ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 685 SSGLSPKPTSTSRTLLSVVNSISSRLTFVGVVSVGSATGLLLSS 554
           SS  S  PTSTS T+ S  +S SS  +    +S  S++    SS
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 216 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 395
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 396 VKAKN 410
            K  N
Sbjct: 163 SKKLN 167


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 750 LRIVSDVDSVRGRXYSFRDXIGLLGCLPSRRQRPARCSRW 631
           LRI   ++      ++  + I L+   PSR ++PA C  W
Sbjct: 137 LRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVNW 176


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 201 VPYVRESMLDTHSLWSNLANEMQHLDDMM-KELS-LKF 308
           VPY   SM+D    W    + +Q LDD   K LS LKF
Sbjct: 252 VPYNVSSMVDCSKTWIRQKHYLQQLDDKSGKILSHLKF 289


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 234 HSLWSNLANEMQHLDD--MMKELSL-KFPSI-INEGRVEGDKYQISIHLPGY---EQKDI 392
           H++  N A E   ++D  ++K +S   F S+ + + R  GD + I I        + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632

Query: 393 NVKAKNGVLMVQANSAF 443
           NV+A+  +LM Q  S F
Sbjct: 633 NVRAERAILMSQGESPF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,410
Number of Sequences: 5004
Number of extensions: 62726
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)