Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B07
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.68 
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   2.8  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    27   4.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.4  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   6.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   8.4  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 261 NDCFTDEECLLSVNSLRQHHMLLAGFKDLGYSFV 362
           N  FTDE+  + V  LRQ +++L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 406 ISVLTHCTTIIYP*GSVSLETLXEKLPTQQALQAVQD--FLACGVENNLLTEDYHVVGHQ 579
           I+    C+ +IYP G+ +L T           +AV +  F+AC      +  DYH  GH 
Sbjct: 206 IAARNGCSVMIYP-GAFNLSTGPLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHS 264

Query: 580 QLIN 591
            +++
Sbjct: 265 TVVD 268


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 173 GNFAAFGRCIQGSETHQEHQKIIETVQPT 87
           GN   FG+C+Q +ET     KI  T++ T
Sbjct: 314 GNLGEFGKCLQKNETLLAKTKIYLTLEGT 342


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 113 KIIETVQPTSLQPVLDFVECKSKS*GFPIVXI 18
           K++ETVQ T +QP +D +  +    G+P+V I
Sbjct: 248 KLLETVQSTIIQPTIDGMRHE----GYPLVGI 275


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 412 PIWFHPAPS*IFPLPPATNE*PKSLNPARS 323
           P +  PAP    PLPP T   P+   P RS
Sbjct: 37  PAFMEPAPVSKKPLPPPTRRLPRKPLPFRS 66


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 188 TPFGDGNFAAFGRCIQGSETHQEHQKIIETVQPTSLQPVLDFVEC 54
           TP  DG    FG+ IQG  T +  +  +ET     + PV+   EC
Sbjct: 122 TPHLDGKHVVFGKVIQGKSTVRTIEN-LETKNDDPVVPVV-IEEC 164


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +3

Query: 231 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQ-HHMLLAGFKDLGYSFVAG 368
           +L ++ + + NDCFT  E   CL    LS N L +        F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,587
Number of Sequences: 5004
Number of extensions: 62391
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)