Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B06
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   2.7  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.6  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    27   3.6  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 294 LPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYVPILNPRIHFASCGRLG 467
           +P +K        +  S    G E   K ++SRV    +P +   +PR+ +A+C  +G
Sbjct: 380 IPSQKWSERHAALMAISSIAEGAEKLMKKELSRVLDMVLPLLADPHPRVRWAACNAVG 437


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 222 LRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQ 401
           L+ + I+ +L G  P  V    +   +++  +  +H+LL + + + L   EK ++   K+
Sbjct: 78  LQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKE 137

Query: 402 DPIPYVPI 425
             I  +P+
Sbjct: 138 REISEIPV 145


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 377 TSNQPSKTRPNPLCTYTQSSXPFCLLWKI 463
           T+N  S+T+PNP  TY +S  P   + KI
Sbjct: 5   TNNNDSETKPNP-ATYWKSRFPVARIKKI 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,714
Number of Sequences: 5004
Number of extensions: 59874
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)