Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_B01
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical ...    31   0.88 
Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical pr...    31   1.5  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       29   3.6  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    29   3.6  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    29   3.6  

>AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical
           protein K10G6.5 protein.
          Length = 124

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -3

Query: 466 VTVTDWXVIFWSAHLR*FLEGFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLXETSYKA 287
           +  T W  + W+  L  F+  FQ++ A + FLALL  SG I+    +  S  L  T +KA
Sbjct: 55  IETTSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLIDCLMVLPLSIILSRTDFKA 111


>Z93385-9|CAB07642.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 329 ASGLFDVAATIEKSKKYLTSEEDLKAFEKLT-EMCAPENDXPVSDSDKGC-ERAKLLLEL 502
           ++G       +  S+K+L + E+  A+ K T E+C   N+ P+ +SDK   ERA    E+
Sbjct: 226 STGFLKYCEAVNASRKHLEAVEE--AYRKTTNELCKDLNEYPM-ESDKDVKERASKYAEI 282

Query: 503 FRCKQ 517
            R K+
Sbjct: 283 CRLKE 287


>Z81083-7|CAB03105.1|  843|Caenorhabditis elegans Hypothetical
           protein F44F1.7 protein.
          Length = 843

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 329 ASGLFDVAATIEKSKKYLTSEEDLKAFEKLT-EMCAPENDXPVSDSDKGC-ERAKLLLEL 502
           ++G       +  S+K+L + E+  A+ K T E+C   N+ P+ +SDK   ERA    E+
Sbjct: 226 STGFLKYCEAVNASRKHLEAVEE--AYRKTTNELCKDLNEYPM-ESDKDVKERASKYAEI 282

Query: 503 FRCKQ 517
            R K+
Sbjct: 283 CRLKE 287


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 383  TSEEDLKAFEKLTEMCAPENDXPVSDSDKGCERAKLLLE 499
            T E+++ A E+  E+   E D    D D+GCE  + +L+
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 383  TSEEDLKAFEKLTEMCAPENDXPVSDSDKGCERAKLLLE 499
            T E+++ A E+  E+   E D    D D+GCE  + +L+
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 383  TSEEDLKAFEKLTEMCAPENDXPVSDSDKGCERAKLLLE 499
            T E+++ A E+  E+   E D    D D+GCE  + +L+
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,154
Number of Sequences: 27780
Number of extensions: 268697
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)