Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_A24
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0583 - 4321169-4321279,4321328-4321384,4321532-4321702,432...   112   4e-25
07_03_0256 - 15875066-15877025,15877292-15877911                       29   3.8  

>03_01_0583 -
           4321169-4321279,4321328-4321384,4321532-4321702,
           4321960-4322042,4322581-4322647,4322730-4322780,
           4323203-4323265,4323363-4323413,4323500-4323556,
           4324261-4324368
          Length = 272

 Score =  112 bits (269), Expect = 4e-25
 Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
 Frame = +1

Query: 208 LKSIERYNPANLEILERYVEMQSRENTYDLGANFSVLKLYQFNPEKFNADITCQILLKAL 387
           L ++  YNP  L  LE +V  Q    TY+L AN S+L+LYQF PE+ +  I  +IL+KAL
Sbjct: 15  LVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKAL 74

Query: 388 TNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVHQMPELCSRISGF 567
              P  DF+LC  L+ E V   E    +  L+  LE   F QFW+   +   +   + GF
Sbjct: 75  MAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGF 134

Query: 568 HDSIRKFVCHVVGITFQTIDKNNLA---NLLGGIDDVTLKHWVKKYGW 702
             +I+ +  HV+ +T+Q + +  LA   N+ G   D  L+H +   GW
Sbjct: 135 EQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGW 182


>07_03_0256 - 15875066-15877025,15877292-15877911
          Length = 859

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +1

Query: 235 ANLEILERYVEMQSRENTYDLGANFSVLKLYQFNPEKFNADITCQILLKALTNFPHTDFT 414
           ANL+ L  YV+  ++E+   LG+  S+L LY F+ E     +T      +   F    F 
Sbjct: 711 ANLQYLHIYVKRINQEDLRMLGSIPSLLTLYLFSDEAPKEKLTI-----SSQGFQSLTFF 765

Query: 415 LCKCLLLESVVENETISQIKYL 480
              C  +  V E  ++++++YL
Sbjct: 766 KIHCYHMGLVFEAGSMAKLEYL 787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,092,242
Number of Sequences: 37544
Number of extensions: 413835
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)