Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_A21
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   366   e-102
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.50 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.2  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    26   8.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   8.2  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  366 bits (901), Expect = e-102
 Identities = 168/225 (74%), Positives = 197/225 (87%), Gaps = 1/225 (0%)
 Frame = +2

Query: 206 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 385
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 386 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 562
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 563 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSV 742
           LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVHNLYKMF+E  LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 743 TKSKFDNLYGCRESLLDGIXRATDIMIAGKVCVXAGYGDVGKGCA 877
           TKSKFDNL+GC+ESL+DGI RATD+MIAGKV V AG+GDVGKGC+
Sbjct: 186 TKSKFDNLFGCKESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCS 230


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -1

Query: 337 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 176
           Y   +  ++W  F  T +K  H+FL  H      +F S   S F        LH +V   
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415

Query: 175 IYLXVNSLAVFF 140
           I L +    +FF
Sbjct: 416 ITLKIRGYGLFF 427


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 109 YFRYFNKNNLKRKQQV---NLPVGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 279
           YF   N +N++ K++    NL   +S F    E + QN   +   +  K++ + ++RN  
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233

Query: 280 PYGMSSEICSS*NTQRCQNSRQLTHD 357
              +++E   S N           HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 696 RNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKIILRGF 556
           RN+L++ CT   +     +  F++ G L + K VK P + + + RGF
Sbjct: 282 RNLLFE-CTEQEL-----YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 67  SCARERVLQYQVPIYFRYFNKNNLKRKQQVNLPVGISNFVLQ 192
           S  +  +L+  V  YFRY  + +LK +Q++ L   +S+  L+
Sbjct: 665 SVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLEFLSSDTLR 706


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 849 PAXTQTXPAIIMSVALXIPSSKDSLHPYKLSNLLFVTESLTLIA 718
           P+ TQ+ P+I  S ++ +  ++DSL   +L+N     E+ T ++
Sbjct: 481 PSETQSKPSIDPSESITVTDNQDSLLFSQLTNNALQAENATKVS 524


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 713 VPAINVNDSVTKSKFDNLYGCRESLLDGIXRATDIMIAGKVCVXA 847
           +PA+    +V  S  DN   CR+ L+  I +  +IM+  K C  A
Sbjct: 347 IPALQKELNVELSPLDNSENCRKQLI-SIFKRCEIMLP-KTCTVA 389


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 247 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 426
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 427 H 429
           H
Sbjct: 150 H 150


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 871 SFSNVTITCXYTNFXRNHYVCCPXDSVEQRL 779
           SFS+VTI C  + F  + ++ C   S  ++L
Sbjct: 617 SFSDVTIYCGTSMFHSHKFILCARSSFLRKL 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,617,334
Number of Sequences: 5004
Number of extensions: 76074
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)