Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_A16
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.009
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.32
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.56
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.0
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 26 9.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.009
Identities = 32/128 (25%), Positives = 35/128 (27%)
Frame = +1
Query: 583 SXKTPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPPPXXKXX 762
S P P P + P PP P PP P + PP
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP---AQP 177
Query: 763 XTPXKTPPXEXSPPXXTPPKXTXHIXPPXQXPXRKPRXXXTXXXATXGTPSXXXPPPXGX 942
P K+PP S P PP PP P P T PS PP
Sbjct: 178 AAPVKSPPSAPSLPSAVPP------MPPKVPP---PPLSQAPVANTSSRPSSFAPPAGHA 228
Query: 943 PXXPXXRP 966
P P
Sbjct: 229 PNVTSESP 236
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.14
Identities = 33/142 (23%), Positives = 37/142 (26%), Gaps = 8/142 (5%)
Frame = +1
Query: 553 GTPXNTXXXGSXKTPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPP---QXPPTPQXT--- 714
G P G PK P PK P G P P PP P +
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 715 XXXKNXXXPPPXXKXXXTPXKTPPXEXSPPXXTPPKXTXHIXPPXQ--XPXRKPRXXXTX 888
K PP P P +PP P + P P P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200
Query: 889 XXATXGTPSXXXPPPXGXPXXP 954
+ G P PPP P P
Sbjct: 1201 PKPSVGVP--PVPPPSTAPPVP 1220
Score = 31.5 bits (68), Expect = 0.18
Identities = 26/124 (20%), Positives = 29/124 (23%)
Frame = +1
Query: 583 SXKTPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPPPXXKXX 762
S P P P P P P P PP P+ PP
Sbjct: 1108 SVAVPPVPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 763 XTPXKTPPXEXSPPXXTPPKXTXHIXPPXQXPXRKPRXXXTXXXATXGTPSXXXPPPXGX 942
P P PP P + PP + P T P G
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 943 PXXP 954
P P
Sbjct: 1227 PPVP 1230
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/118 (22%), Positives = 31/118 (26%)
Frame = +1
Query: 580 GSXKTPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPPPXXKX 759
G+ PK P P + P P P P PP + K PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSS---GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 760 XXTPXKTPPXEXSPPXXTPPKXTXHIXPPXQXPXRKPRXXXTXXXATXGTPSXXXPPP 933
P P PP P PP P + T + S P P
Sbjct: 1214 STAPPVPTPSAGLPPVPVPTAKA----PPVPAPSSEAPSVSTPRSSVPSPHSNASPSP 1267
Score = 27.1 bits (57), Expect = 4.0
Identities = 28/120 (23%), Positives = 32/120 (26%), Gaps = 3/120 (2%)
Frame = +1
Query: 595 PKXPXKPPXNPKRXTRGXXXP-XXPGPP-XXPPQXPPTPQXTXXXKNXXXPPPXXKXXXT 768
PK K P P P PP P PP P+ + + PPP
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPS--APPPVPAPSSE 1072
Query: 769 PXKTPPXEXSPPXXTPPKXTXHIXPP-XQXPXRKPRXXXTXXXATXGTPSXXXPPPXGXP 945
P +PP P P P KP A G P P P
Sbjct: 1073 IPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 26.6 bits (56), Expect = 5.2
Identities = 20/94 (21%), Positives = 22/94 (23%), Gaps = 1/94 (1%)
Frame = +1
Query: 667 GPPXXPPQXPPTPQXTXXXKNXXXPPPXXKXXXTPXKTPPXEXSPPXXTPPKXTXHI-XP 843
G P PP P PP P P +PP P + P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Query: 844 PXQXPXRKPRXXXTXXXATXGTPSXXXPPPXGXP 945
P KP G P P P
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.32
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +1
Query: 673 PXXPPQXPPT-PQXTXXXK-NXXXPPPXXKXXXTPXKTPPXEXSPPXXTPPKXTXHIXPP 846
P P PP PQ + + PPP P PP PP PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 847 XQXP 858
P
Sbjct: 1743 VPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.56
Identities = 27/119 (22%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Frame = +1
Query: 592 TPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQX----PPTPQXTXXXKNXXXPPPXXKX 759
T K P PP + P PP P + PP + PPP
Sbjct: 287 TSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN 346
Query: 760 XXTPXKTPPXEXSPPXXTPPKXTXHI--XPPXQXPXRKPRXXXTXXXATXGTPSXXXPP 930
PP S P PP+ PP R A G + PP
Sbjct: 347 AAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 29.9 bits (64), Expect = 0.56
Identities = 30/126 (23%), Positives = 34/126 (26%), Gaps = 2/126 (1%)
Frame = +1
Query: 595 PKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPPPXXKXXXTPX 774
P+ PP P R P PP P ++ PP T
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT-- 412
Query: 775 KTPPXEXSPPXXTPPKXTXHIXPPXQXPXRKPRXXXTXXXATXGTPSXXXPP--PXGXPX 948
+PP TPP PP P P A PS P P G P
Sbjct: 413 ------STPPVPTPPSLPPS-APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA 465
Query: 949 XPXXRP 966
P P
Sbjct: 466 APPLPP 471
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/80 (21%), Positives = 19/80 (23%)
Frame = +1
Query: 565 NTXXXGSXKTPKXPXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPP 744
N + P P PP P G P PP P P P
Sbjct: 408 NASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Query: 745 PXXKXXXTPXKTPPXEXSPP 804
P P P + P
Sbjct: 468 PLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 6.9
Identities = 20/87 (22%), Positives = 23/87 (26%)
Frame = +3
Query: 672 PPXXPTXPXHXPXHXXXKKRRPPPPXXEXXXHPXXNPPPGXXPPXXNTPKXHXPHXXPPT 851
PP P+ P P P PP + + PP PP P P T
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPN-SPPRPIAPVSMNP-AINST 287
Query: 852 XTXEKAPPXXHXXXGXXXDTXXXXPPP 932
PP PPP
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +3
Query: 735 PPPPXXEXXXHPXXNPPPGXXPPXXN-TP 818
PPPP E P PPPG N TP
Sbjct: 13 PPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +1
Query: 670 PPXXPPQXPPTPQXTXXXKNXXXPPP 747
PP PP PP P + PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/75 (25%), Positives = 22/75 (29%)
Frame = +1
Query: 604 PXKPPXNPKRXTRGXXXPXXPGPPXXPPQXPPTPQXTXXXKNXXXPPPXXKXXXTPXKTP 783
P PP + P P PP PPQ T Q +N P TP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN-IPPPPATP 279
Query: 784 PXEXSPPXXTPPKXT 828
PP + T
Sbjct: 280 SQPPRPPTNASTRST 294
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +3
Query: 669 PPPXXPTXPXHXPX---HXXXKKRRPPPPXXEXXXHPXXNPPPGXXPPXXNTPKXHXP 833
PPP H P H + PPPP P + PP PP + P H P
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH---EPGEHMPP---PPMHHEPGEHMP 338
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 713 VXWGVGGXCGGXXGG 669
+ WG+GG GG GG
Sbjct: 162 IVWGIGGSLGGPLGG 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.139 0.463
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,643
Number of Sequences: 5004
Number of extensions: 24177
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -