Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_A09
         (960 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779           36   5e-05
09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176...    29   5.5  

>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
          Length = 106

 Score = 35.9 bits (79), Expect(2) = 5e-05
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +2

Query: 389 LGHHVLNGKEVKLEQPMAVIQK---TNLGDEIKYEXXXXXXXXLLFKSRPKPII 541
           +G+H L G +V L++P+ V++K   T +  E + E        +LFK RPK +I
Sbjct: 28  VGYHELAGTKVALKKPLLVLRKKKTTAVAAETELEVIGVIRHKILFKDRPKALI 81



 Score = 29.5 bits (63), Expect(2) = 5e-05
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 227 MQIYIDCKNVEGGVPEWAIIE 289
           MQI + C   E G PEWAI+E
Sbjct: 1   MQIRVRCGCGEAGCPEWAIVE 21


>09_04_0253 +
           16116614-16116671,16117194-16117258,16117596-16117663,
           16120032-16120138,16120429-16120478,16120552-16120634,
           16120708-16120800,16122349-16122379,16122428-16122521,
           16122563-16122612
          Length = 232

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 284 IELQGLVQMKNENPTCATVVGDLHYYNRNRHPV 382
           IEL+G  +      TC  +V D+ YYN+   PV
Sbjct: 96  IELEGACEGSLACSTCHVIVTDVDYYNKLEDPV 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,361
Number of Sequences: 37544
Number of extensions: 404263
Number of successful extensions: 2424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2423
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)