Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_A09
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   4.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.5  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 583 LYTNFYSNIFRYITNNRFRSRFEQ*LLLNNSLHFILNFISQV 458
           L  N+ SNI  Y  NN +          N  L++ +N+I Q+
Sbjct: 85  LSNNYISNISNYNNNNNY----------NKKLYYNINYIEQI 116


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 583 LYTNFYSNIFRYITNNRFRSRFEQ*LLLNNSLHFILNFISQV 458
           L  N+ SNI  Y  NN +          N  L++ +N+I Q+
Sbjct: 323 LSNNYISNISNYNNNNNY----------NKKLYYNINYIEQI 354


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 371 RHPVLVLGHHVLNGKEVKLE 430
           RHP++ +  HV +GK   L+
Sbjct: 144 RHPIVTIMGHVDHGKTTLLD 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,699
Number of Sequences: 438
Number of extensions: 4247
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)