Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_A03
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.24 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.28 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   4.7  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   5.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   6.5  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +2

Query: 413 GXXGGXGGGGXGGXXEXGX*GKGGXRGXGGGXGXXXXKXGXXGXXXMGGK 562
           G  GG GGG  G         +GG  G GG  G      G  G    G K
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 0.28
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 465 PXSXXPPXPPPPXP 424
           P    PP PPPP P
Sbjct: 184 PSDYNPPPPPPPPP 197



 Score = 24.6 bits (51), Expect(2) = 0.28
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 447 PXPPPPXPPFXP 412
           P PPPP PP  P
Sbjct: 236 PAPPPPPPPTLP 247


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 422 GGXGGGGXGGXXEXGX*GKGGXRGXGGGXG 511
           GG   GG GG    G  G GG  G GGG G
Sbjct: 446 GGGSRGGRGGFGGRG--GFGGRGGFGGGRG 473


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
 Frame = +2

Query: 413 GXXGGXGG-----GGXGGXXEXGX*GKGGXRGXGGGXGXXXXKXGXXG 541
           G  GG GG     GG GG        +GG  G GGG G      G  G
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFG 255


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 450 PPXPPPPXP 424
           PP PPPP P
Sbjct: 775 PPPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 4.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 465 PXSXXPPXPPPP 430
           P    PP PPPP
Sbjct: 756 PIMGGPPPPPPP 767


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 GGXGGXXEXGX*GKGGXRGXGGGXG 511
           GG GG    G  G+GG R  GGG G
Sbjct: 508 GGRGGNYRRGGYGRGGFR-RGGGYG 531


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect(2) = 6.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 439 PPPXPPXXPXFFXSPXSXP 383
           PPP PP       SP S P
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388



 Score = 21.8 bits (44), Expect(2) = 6.5
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -2

Query: 589 PFXPFFXXXFSPHXXLPLXPPFXXXXPXSXPXPP 488
           P  PFF   FSPH               S P PP
Sbjct: 341 PPAPFFPLGFSPHLNDESSRSRWSNISYSPPPPP 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,913
Number of Sequences: 5004
Number of extensions: 9533
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)