Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P24
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.49 
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    32   0.49 
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +3

Query: 150 PTLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHITWTVPKADLT 296
           PT + T T   TT  T+   P TTT  ET T  +TT   T T P    T
Sbjct: 112 PTTETTTTPTTTTPTTTTTTPTTTTT-ETTTTPTTTTTETTTTPTTTTT 159



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 150 PTLKETA-TNLLTTARTSLILPKTTTXMETATNLS-TTVHITWTVPKADLT 296
           PT   TA T   TT  T+   P TTT + T T  + TT   T T P    T
Sbjct: 189 PTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTT 239



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +3

Query: 153 TLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHITWTVPKADLT 296
           T   T T   TT  T+   P TTT   T     TT   T T P    T
Sbjct: 83  TTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTT 130



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 153 TLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHI-TWTVPKADLT 296
           T   T T   TT  T+  +P TTT   T T  +TT    T T P    T
Sbjct: 198 TTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTT 246



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 153 TLKETATNLLTTARTSLILPKTTTXM-ETATNLSTTVHITWTVPKADLT 296
           T   T T   TT  T+   P TTT    T T   TT   T T P  + T
Sbjct: 69  TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETT 117


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +3

Query: 147 WPTLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHITWTVPKADLT 296
           WP   ET     TT  T+  +P TTT   T T  +T    T T   A  T
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTT 347


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +3

Query: 147 WPTLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHITWTVPKADLT 296
           WP   ET     TT  T+  +P TTT   T T  +T    T T   A  T
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTT 347


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 135 LCWLWPTLKETATNLLTTARTSLILPKTTTXM---ETATNLSTTVHITWTVP 281
           LC+LW  L  T T   TT  T+  +  TTT +    T T    T   T TVP
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVP 230


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 153 TLKETATNLLTTARTSLILPKTTTXMETATNLSTTVHITWTVP 281
           T   T T   TT+ T+   P TTT     T  STT   T T P
Sbjct: 60  TTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 150 PTLKETATNLLTTARTSLILPKTTTXMET--ATNLSTTVHITWTV 278
           PT+  T T ++TT  T + +P T   + T   TN ST V    TV
Sbjct: 361 PTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTV 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,337
Number of Sequences: 27780
Number of extensions: 206493
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)