Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P23
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   185   8e-48
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   141   1e-34
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   1.2  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    27   3.5  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    26   6.2  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   6.2  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   8.2  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  185 bits (450), Expect = 8e-48
 Identities = 112/226 (49%), Positives = 133/226 (58%), Gaps = 1/226 (0%)
 Frame = +2

Query: 167 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSFAYKNVIGARRA 346
           + RED VY AKLAEQAERY+ MVE MK+VAS   +D ELTVEERNLLS AYKNVIGARRA
Sbjct: 4   TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60

Query: 347 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLXQVPHPQLTDRRIK 526
           SWRI+SSIEQKEE+KG   ++ +I+ YR ++E+EL  IC DIL VL +   P       K
Sbjct: 61  SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120

Query: 527 SFLLQNEGRLPPVPGRVR-DRQRPQGGCRELAGRVQGXXXXXXXXXXXXXXXXXXXXXXX 703
            F  + +G             +R     + L G                           
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEG--YKAASEIATAELAPTHPIRLGLALN 178

Query: 704 XXXXXXXXLNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTXIMQ 841
                   LNSPDRAC LAK AFD+AI+ELD+LSEESYKDST IMQ
Sbjct: 179 FSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQ 224



 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +3

Query: 489 KYLIPSSQTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAAS 641
           K+LIP++ + ESKVFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS
Sbjct: 108 KHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAAS 158



 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 24/27 (88%), Positives = 24/27 (88%)
 Frame = +1

Query: 646 IAMTELXPTHPIRLGLALNFSVFYYEI 726
           IA  EL PTHPIRLGLALNFSVFYYEI
Sbjct: 160 IATAELAPTHPIRLGLALNFSVFYYEI 186


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  141 bits (342), Expect = 1e-34
 Identities = 74/128 (57%), Positives = 93/128 (72%)
 Frame = +2

Query: 167 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSFAYKNVIGARRA 346
           + RE++VY AKLAEQAERY+EMVE MK VA  N   ++L+VEERNLLS AYKN+IGARRA
Sbjct: 3   NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59

Query: 347 SWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELRDICSDILGVLXQVPHPQLTDRRIK 526
           SWRIISSIEQKEE++G   +  +I+ YR ++E EL DIC D+L VL +   P  T    K
Sbjct: 60  SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119

Query: 527 SFLLQNEG 550
            F  + +G
Sbjct: 120 VFYYKMKG 127



 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +3

Query: 489 KYLIPSSQTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAAS 641
           K+LIP++ TGESKVFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAAS
Sbjct: 107 KHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAAS 157



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +2

Query: 728 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTXIMQ 841
           L+SP+ AC LAK  FD+AI+ELD+LSEESYKDST IMQ
Sbjct: 186 LDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQ 223



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 646 IAMTELXPTHPIRLGLALNFSVFYYEI 726
           IA+ EL PT P+RLGLALNFSVFYYEI
Sbjct: 159 IAVAELPPTDPMRLGLALNFSVFYYEI 185


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = +2

Query: 182  NVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSFAYKNVIGARRASWRII 361
            N +   +A+Q   Y+E +  + N   R +S N       NL   A K  I +    +   
Sbjct: 779  NAHAYNVAKQQRAYEEEINRIWNAQKRGLSIN-------NLEELAKKYGINSIHDDYVES 831

Query: 362  SSIEQKEETKGAEDKLNMIRAYRSQ 436
            +    +EET  ++  L ++R YR +
Sbjct: 832  NEETTREETPSSDKVLRIVRLYRDK 856


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 224 DEMVEAMKNVASRNVSDNELTVEERNLLSFAYKNVIGARRASWRIISSIEQKE 382
           +E VEA K   S+N S  +    + NL  F   N        W +I S  Q +
Sbjct: 75  EEAVEASKTSDSQNESTLDPRKVQLNLTGFLESNATAFTEELWSLIISASQNQ 127


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 22/100 (22%), Positives = 45/100 (45%)
 Frame = +2

Query: 155 SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSFAYKNVIG 334
           SST S    N    ++  Q+E Y ++ +   + +  ++SD E  +E R       +N + 
Sbjct: 45  SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSV- 103

Query: 335 ARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKELR 454
              +S   +SS     ET+ + + L     + S  +K+++
Sbjct: 104 ---SSIENVSSSAVARETQSSANILVKDNHFFSHKQKKIQ 140


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 477 PRMSEQMSRSSFSTWLRYALIMFNLSSAPFVSSFCSM 367
           P ++E  + +S S+W+  A ++ + +  P V  FC++
Sbjct: 121 PTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 284 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 162
           S+H   + +  H    P F  S    QLTLL +   YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,531
Number of Sequences: 5004
Number of extensions: 45801
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)