Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P22
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    27   4.6  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   6.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.1  

>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -1

Query: 684 NIHRKKIVAFLAKDKHNSMNDGIVLTITTHAGSLLEDRRLVFCDQ--IPSRPYRRLR 520
           +IH+K +V  + K    S+ DG+      HA SL      +  D+  + S  YR  R
Sbjct: 184 SIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFR 240


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 168 NTPSEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVK 290
           N  +  Y+ +  P     +R W  GR +++ DRT  DS+ K
Sbjct: 866 NVNAPHYYLNTQPHLKLESRDWMLGRVTSIEDRTADDSTDK 906


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 168  NTPSEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN 332
            N   +   QS  P  SR     E+ R + L+DR   +   KP+T E  ++ T++N
Sbjct: 1131 NAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVLSKPLTDELLALATSLN 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,279
Number of Sequences: 5004
Number of extensions: 79455
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)