Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P22
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 33 0.39
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 33 0.39
01_06_0513 - 29944888-29945943 30 2.1
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141... 30 2.8
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 3.7
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 6.4
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 28 8.5
03_04_0220 - 18741485-18741915,18742007-18742190 28 8.5
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 LFFIATVLVCVNAE-VYRSPDYEEEYPIRGLFSKRHPRDVTWDTKMGGGKVF 250
+ I VL CV +Y EE YPI+G +S+ +T+D ++ K+F
Sbjct: 462 VMLILVVLTCVGTHYIYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMF 513
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 570 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 478
R++ CD PS R RL C CSYQ +SPR
Sbjct: 29 RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61
>01_06_0513 - 29944888-29945943
Length = 351
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 132 TQKYT-GLLITKKNTPSEAYFQSDTPVTSRGTRKWEEGRSSALWD 263
T +Y G + P+ A + P +RGT +W EG + AL D
Sbjct: 65 TDRYAQGFEFAPRPAPATATATAPAPTPARGTPEWSEGSTFALLD 109
>01_01_0166 +
1412918-1413309,1413845-1414006,1414534-1414720,
1415221-1415646,1416028-1416036,1416361-1416768,
1417397-1417654
Length = 613
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 573 RRLVFCDQIPSRPYRRLRCGCSYQDPTHRSPRLSFQICLR 454
+R++ CD P+RP+R + CG + + P F+ +R
Sbjct: 146 KRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKFKHSIR 185
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +3
Query: 66 PQTTQNEFXIACFSSLQSWCV*TQKYTGLLITKKNTPSEAYFQSDTPVTSRGTRKWEEGR 245
P+ N +C S+L C + + K++ +AY Q+D+ S+ +
Sbjct: 141 PERLANTIFTSCASTLPK-CSPSIDVLHIGHIKEHFSGDAY-QNDS---SQPSTSGSSSS 195
Query: 246 SSALWDRTTMDSSVKPVTTERFSMMTAVN 332
SA+WD+TT S+++ + + FS + N
Sbjct: 196 LSAVWDQTTCSSAMRTLPMDSFSTVNGQN 224
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 107 IATVLVCVNAEVYRSPDYEEEYPIRGLFSKRHPRDVTWDTKMGGGKVFGTLGQND 271
+AT+ + + Y Y E P+ GL K ++ W T++ KV G +G D
Sbjct: 743 VATLGQVIQSTGYVISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGALD 797
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Frame = +3
Query: 348 TAPGXLGPGGDSTNYGG----------RLDWANKNAQAAIDINRQIGGRSGMTASGSGVW 497
T+ G G GG+ +GG L ++ A+ ++++ Q+GG G+ ++G G
Sbjct: 103 TSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG-- 160
Query: 498 DLDKNTHISAGGMVSKEFGHRRPD 569
AGG V E HR D
Sbjct: 161 --------GAGGQVHDEMPHRNVD 176
>03_04_0220 - 18741485-18741915,18742007-18742190
Length = 204
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 478 PRAPVCGI-LIRTPTSQPAVWSRRNLVTEDQTSVFKQRSGMSGDCQHNPII 627
P AP C + L +P S PAV R+ + S+ SG + + +P++
Sbjct: 149 PEAPSCDLGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTTGGERDPVL 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,661,342
Number of Sequences: 37544
Number of extensions: 546335
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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