Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P20
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 85 2e-17
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 81 2e-16
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 1.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 2.1
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 27 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.4
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 84.6 bits (200), Expect = 2e-17
Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 5/220 (2%)
Frame = +3
Query: 147 PFPRXAWSXVXAPSXVXXAASRHHACQPXPGSRKLLRKGLQGSVFEVSLADLQADTDAXR 326
PF R W + AP+ G + L+G + EVSLADLQ D +
Sbjct: 23 PFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNA-NDSLKGRILEVSLADLQKDEE--H 79
Query: 327 SFRKFSLIAEXCART*CALQLPRHG-PHNRISSGGWLKNGRLSSKPTLM*RQPNGYVLRV 503
SFRK L E C +++ S + + T+ + +GY+ R+
Sbjct: 80 SFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTI--KTTDGYLCRI 137
Query: 504 FCIGFTNKDSLSQRKNVLRPAHSGQSNQKENV*NHYTRTSLTLNSG----RW*TKLIPDS 671
F IGFT S+R N ++ QS+Q + + +G KLIP+
Sbjct: 138 FVIGFT-----SRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEV 192
Query: 672 IAKDIEKACHGIYPLRDVCIRKVKVLKXPRFEISKLMELH 791
I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 193 IGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 81.4 bits (192), Expect = 2e-16
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 1/216 (0%)
Frame = +3
Query: 147 PFPRXAWSXVXAPSXVXXAASRHHACQPXPGSRKLLRKGLQGSVFEVSLADLQADTDAXR 326
PF R W + AP+ G + L+G + EVSLADLQ D +
Sbjct: 23 PFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNA-NDSLKGRILEVSLADLQKDEE--H 79
Query: 327 SFRKFSLIAEXCART*CALQLPRHG-PHNRISSGGWLKNGRLSSKPTLM*RQPNGYVLRV 503
+FRK L E C +++ S + + T+ + +GY+ RV
Sbjct: 80 AFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTI--KTTDGYLCRV 137
Query: 504 FCIGFTNKDSLSQRKNVLRPAHSGQSNQKENV*NHYTRTSLTLNSGRW*TKLIPDSIAKD 683
F IGFT + + +K + ++ +++ +TS + + KLIP+ I ++
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTS-SCSMRELVQKLIPEVIGRE 196
Query: 684 IEKACHGIYPLRDVCIRKVKVLKXPRFEISKLMELH 791
IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 197 IERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 377 CSATSTAWTSQPNKLRWMVKKWQTLIEANIDVKTTE 484
C + + +KLR +V+KWQT IEA+ +KTT+
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTD 131
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +2
Query: 341 QLNRRNXCKDVMCSATSTAWTSQPNKLRWMVKKWQ---TLIEANIDVKTTEWIRSTCLLH 511
+L+ C+ MC+ T W + L++ K Q T ++A+ID+ ++ I LL
Sbjct: 454 ELDENQPCQSPMCTMKDTNWIRRNMHLQFGPLKRQIFLTQVKADIDMLSSLGIMDYSLLV 513
Query: 512 WFHQ*GLLEPTQERATPSTLRSEQSERKCVKSLHANVTNSE---LREVVN 652
H + R + ++ + V S++ N ++S +R+VVN
Sbjct: 514 GIHDLSRGNRDKIRNSILSVYDPNVSQHRVPSINGNESHSNVHVIRQVVN 563
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 783 PSTSRSRNGASSTLSPFGCKHRAE 712
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 541 WLKESLLV-KPMQKTRRTYPFGCLHINVGFDES 446
W+KE+ LV KP Q +R G L +N +DE+
Sbjct: 77 WVKETKLVAKPDQLIKRRGKSGLLKLNATWDEA 109
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 536 EPTQERATPSTLRSEQSERKCVKSLHANVTN 628
E Q+ A P T R +E K KSL A +TN
Sbjct: 1416 ERLQKPAIPRTRRKGHTEPKSAKSLLAELTN 1446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,730
Number of Sequences: 5004
Number of extensions: 56917
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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